Information for CAZyme ID: ACM57092.1
Basic Information
| GenBank ID | ACM57092.1 |
| Family | GH13 |
| Sequence Length | 728 |
| UniProt ID | B9LP04(100,100) |
| Average pLDDT? | 84.54 |
| CAZy50 ID | 35271 |
| CAZy50 Rep | Yes, ACM57092.1 |
| Structure Cluster | SC_GH13_clus76 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 416348 |
| Kingdom | Archaea |
| Phylum | Euryarchaeota |
| Class | Halobacteria |
| Order | Haloferacales |
| Family | Halorubraceae |
| Genus | Halorubrum |
| Species | Halorubrum lacusprofundi |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MHHPGPPRFL ATGETTELAP RDPDPNGSYE WRVVDAPPDS EATVGTDPVT EFTPDVPGRY | 60 |
| WIGLDAPDGD HRLTVHAFPS SYEGVDVEGG SGTEIRDRTA GNAPVDYAEP RGDGGVGRPR | 120 |
| MRLDASVELG ETDGDEEGGD EKGSDEKSSD EKSSDGTGKP EIVVRATPTP NPHSSLGAGD | 180 |
| LRVTFIVDDR DVESAVAEGR RNPRDALRTS DDGRELRVPA AAVADRLRVH GVAVAAEPGQ | 240 |
| EPRVSVADAV AVDRSDGGVG RHDEGDKTSD RNNGDDGRIG GPTRPAFETV RLNDPPTWTH | 300 |
| DATVYEVYVR TFADEGKGET FGSIADRIPA IAELGVDTLW LTPVLQHDGK PHGYNITDFF | 360 |
| DVAEDLGERD DYEALVETAH DHGMRVLFDF VANHTARDHE WFEDAYQNPD SPYRDRYEWQ | 420 |
| ESGEPGTYFD WELIANLNHS NLEVRRFLLD VVDEWAPLVD GFRCDMAWAV PDSFWRELRD | 480 |
| RVKDIDREFL LMDETIPYIP GFHEGMFDVH FDATLYFQLR QIGRGVDPAM SLLDAIDQRA | 540 |
| EIGFPDHAEF LQYIENHDET RYRVECGDAA AAAAGAAIFT LPGVPMIYAG QEIGQRGRRD | 600 |
| AIAWDHAREG VRDRYERLIA VREAHPALGP EGDLDRVGYH VASGDVSERP IVASGDVHPD | 660 |
| DVVAFRRSDE DEELVVVLNF APEPASVSVG VDHADRDLVS GDPCVVVDGD GTERIRVDDV | 720 |
| AVARVEGR | 728 |
Predicted 3D structure by AlphaFold2 with pLDDT = 84.54 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MHHPGPPRFL ATGETTELAP RDPDPNGSYE WRVVDAPPDS EATVGTDPVT EFTPDVPGRY | 60 |
| WIGLDAPDGD HRLTVHAFPS SYEGVDVEGG SGTEIRDRTA GNAPVDYAEP RGDGGVGRPR | 120 |
| MRLDASVELG ETDGDEEGGD EKGSDEKSSD EKSSDGTGKP EIVVRATPTP NPHSSLGAGD | 180 |
| LRVTFIVDDR DVESAVAEGR RNPRDALRTS DDGRELRVPA AAVADRLRVH GVAVAAEPGQ | 240 |
| EPRVSVADAV AVDRSDGGVG RHDEGDKTSD RNNGDDGRIG GPTRPAFETV RLNDPPTWTH | 300 |
| DATVYEVYVR TFADEGKGET FGSIADRIPA IAELGVDTLW LTPVLQHDGK PHGYNITDFF | 360 |
| DVAEDLGERD DYEALVETAH DHGMRVLFDF VANHTARDHE WFEDAYQNPD SPYRDRYEWQ | 420 |
| ESGEPGTYFD WELIANLNHS NLEVRRFLLD VVDEWAPLVD GFRCDMAWAV PDSFWRELRD | 480 |
| RVKDIDREFL LMDETIPYIP GFHEGMFDVH FDATLYFQLR QIGRGVDPAM SLLDAIDQRA | 540 |
| EIGFPDHAEF LQYIENHDET RYRVECGDAA AAAAGAAIFT LPGVPMIYAG QEIGQRGRRD | 600 |
| AIAWDHAREG VRDRYERLIA VREAHPALGP EGDLDRVGYH VASGDVSERP IVASGDVHPD | 660 |
| DVVAFRRSDE DEELVVVLNF APEPASVSVG VDHADRDLVS GDPCVVVDGD GTERIRVDDV | 720 |
| AVARVEGR | 728 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.