CAZyme3D

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Entry ID

Information for CAZyme ID: ACM23010.1

Basic Information

GenBank IDACM23010.1
FamilyGH2
Sequence Length798
UniProt IDB9K7S7(100,100)Download
Average pLDDT?95.65
CAZy50 ID27536
CAZy50 RepYes, ACM23010.1
Structure ClusterSC_GH2_clus152
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID309803
KingdomBacteria
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyThermotogaceae
GenusThermotoga
SpeciesThermotoga neapolitana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIYIQKEGGR  FMRRIDLNGR  WQIRDSKGEF  SLVGLVPGVV  QADLVREGLL  PHPYVGTNED60
LFKEIEDREW  IYEREFNFRE  DLLDEDRVDL  VFEGIDTLAD  VYLNDVYLGS  TEDMFLEYRF120
DIKGVLKEKN  HLRVFIKSPV  KVPKTLEQNY  GVLGGPEDSI  RGYIRKAQYS  YGWDWGARIV180
TSGIWRPVYI  ETYRKARLQD  STAYLVDLKG  KDAVVKVNGF  VYGEGDLSVD  VFVNGEKMGS240
YQVMEKNGEK  FFEGVFSLKN  VKLWYPWNVG  EPYLYDFTFI  LKESEKEVYR  EEKKIGLRKV300
RILQEPDGEG  KTFIFEINGE  KVFAKGANWI  PADNILTWLK  TEDYEKLVKM  AKEANMNMLR360
VWGGGIYESE  DFYKLCDELG  IMVWQDFMYA  CLEYPDHLPW  FRKLANDEAR  KIVRKLRYHP420
SIVLWCGNNE  NNWGFDEWGN  MSRKVDGINL  GNRLYLFDFP  RICAEEDPAT  PYWPSSPYGG480
EKANSEKEGD  RHVWNVWSGW  MNYDHYEKDT  GKFISEFGFQ  GAPHMKTIEF  FSKPQERDPF540
HPVMLKHNKQ  VEGQERLIRF  IYGNFGRCRD  FESFVYLSQL  NQAEAIKFGV  EHWRSRKYKT600
AGTLFWQLND  SWPVFSWSAV  DYFKRPKALY  YYARRFFADV  LPVVKKVDGK  VGLFVVSDLR660
ELKKASVRFA  AYRVSGDLVF  EKFYDVTLPA  DSVTLVDTVS  TSDDLVFFVE  VRVEGRSFKN720
YRILKKWREM  DVPDPGISVI  EKENEIEITA  ERPAFGIKIL  SEELPEDDFL  FLEPGEKIIL780
KKPGGFFDVK  SLFDYLER798

Predicted 3D structure by AlphaFold2 with pLDDT = 95.65 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIYIQKEGGR  FMRRIDLNGR  WQIRDSKGEF  SLVGLVPGVV  QADLVREGLL  PHPYVGTNED60
LFKEIEDREW  IYEREFNFRE  DLLDEDRVDL  VFEGIDTLAD  VYLNDVYLGS  TEDMFLEYRF120
DIKGVLKEKN  HLRVFIKSPV  KVPKTLEQNY  GVLGGPEDSI  RGYIRKAQYS  YGWDWGARIV180
TSGIWRPVYI  ETYRKARLQD  STAYLVDLKG  KDAVVKVNGF  VYGEGDLSVD  VFVNGEKMGS240
YQVMEKNGEK  FFEGVFSLKN  VKLWYPWNVG  EPYLYDFTFI  LKESEKEVYR  EEKKIGLRKV300
RILQEPDGEG  KTFIFEINGE  KVFAKGANWI  PADNILTWLK  TEDYEKLVKM  AKEANMNMLR360
VWGGGIYESE  DFYKLCDELG  IMVWQDFMYA  CLEYPDHLPW  FRKLANDEAR  KIVRKLRYHP420
SIVLWCGNNE  NNWGFDEWGN  MSRKVDGINL  GNRLYLFDFP  RICAEEDPAT  PYWPSSPYGG480
EKANSEKEGD  RHVWNVWSGW  MNYDHYEKDT  GKFISEFGFQ  GAPHMKTIEF  FSKPQERDPF540
HPVMLKHNKQ  VEGQERLIRF  IYGNFGRCRD  FESFVYLSQL  NQAEAIKFGV  EHWRSRKYKT600
AGTLFWQLND  SWPVFSWSAV  DYFKRPKALY  YYARRFFADV  LPVVKKVDGK  VGLFVVSDLR660
ELKKASVRFA  AYRVSGDLVF  EKFYDVTLPA  DSVTLVDTVS  TSDDLVFFVE  VRVEGRSFKN720
YRILKKWREM  DVPDPGISVI  EKENEIEITA  ERPAFGIKIL  SEELPEDDFL  FLEPGEKIIL780
KKPGGFFDVK  SLFDYLER798

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(13-656)

MIYIQKEGGR  FMRRIDLNGR  WQIRDSKGEF  SLVGLVPGVV  QADLVREGLL  PHPYVGTNED60
LFKEIEDREW  IYEREFNFRE  DLLDEDRVDL  VFEGIDTLAD  VYLNDVYLGS  TEDMFLEYRF120
DIKGVLKEKN  HLRVFIKSPV  KVPKTLEQNY  GVLGGPEDSI  RGYIRKAQYS  YGWDWGARIV180
TSGIWRPVYI  ETYRKARLQD  STAYLVDLKG  KDAVVKVNGF  VYGEGDLSVD  VFVNGEKMGS240
YQVMEKNGEK  FFEGVFSLKN  VKLWYPWNVG  EPYLYDFTFI  LKESEKEVYR  EEKKIGLRKV300
RILQEPDGEG  KTFIFEINGE  KVFAKGANWI  PADNILTWLK  TEDYEKLVKM  AKEANMNMLR360
VWGGGIYESE  DFYKLCDELG  IMVWQDFMYA  CLEYPDHLPW  FRKLANDEAR  KIVRKLRYHP420
SIVLWCGNNE  NNWGFDEWGN  MSRKVDGINL  GNRLYLFDFP  RICAEEDPAT  PYWPSSPYGG480
EKANSEKEGD  RHVWNVWSGW  MNYDHYEKDT  GKFISEFGFQ  GAPHMKTIEF  FSKPQERDPF540
HPVMLKHNKQ  VEGQERLIRF  IYGNFGRCRD  FESFVYLSQL  NQAEAIKFGV  EHWRSRKYKT600
AGTLFWQLND  SWPVFSWSAV  DYFKRPKALY  YYARRFFADV  LPVVKKVDGK  VGLFVVSDLR660
ELKKASVRFA  AYRVSGDLVF  EKFYDVTLPA  DSVTLVDTVS  TSDDLVFFVE  VRVEGRSFKN720
YRILKKWREM  DVPDPGISVI  EKENEIEITA  ERPAFGIKIL  SEELPEDDFL  FLEPGEKIIL780
KKPGGFFDVK  SLFDYLER798

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help