CAZyme3D

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Entry ID

Information for CAZyme ID: ACD66810.1

Basic Information

GenBank IDACD66810.1
FamilyGT4
Sequence Length356
UniProt IDB2VA37(100,100)Download
Average pLDDT?94.79
CAZy50 ID129048
CAZy50 RepYes, ACD66810.1
Structure ClusterSC_GT4_clus864
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID436114
KingdomBacteria
PhylumAquificota
ClassAquificae
OrderAquificales
FamilyHydrogenothermaceae
GenusSulfurihydrogenibium
SpeciesSulfurihydrogenibium sp. YO3AOP1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLRIAHVVNT  LSGGGAERVA  VSVYNCLKEK  YKNEFIIAKN  IVKLNVNFKP  TIIFNKKPLL60
PSFLYEKLLL  YKLKEVLKDF  DVVISHLRDM  NTRLSYLKSK  NLLKPKLIIV  EHVPAELYSE120
KEKRIIKKYY  KYADLIVAVS  DKVRDDLIEY  FNLEPNKIQV  IYNGVDIESV  VKLSNAFQTT180
LDKPCIVSAG  RLSIDKDFET  LIKGVCHLNT  KPFLYILGEG  SKRKDLENLI  KSLKLKDKVF240
LVGFIENPFP  YIKNCDIYIT  SSIRESFSMS  TLEAMALGKP  VISTNVVPFV  KDNFNSLVFK300
PKDYTTLANH  IDTLLSNEKL  REFLSKNAHE  TAKELSIDSM  CREYKNLIER  FKVENV356

Predicted 3D structure by AlphaFold2 with pLDDT = 94.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLRIAHVVNT  LSGGGAERVA  VSVYNCLKEK  YKNEFIIAKN  IVKLNVNFKP  TIIFNKKPLL60
PSFLYEKLLL  YKLKEVLKDF  DVVISHLRDM  NTRLSYLKSK  NLLKPKLIIV  EHVPAELYSE120
KEKRIIKKYY  KYADLIVAVS  DKVRDDLIEY  FNLEPNKIQV  IYNGVDIESV  VKLSNAFQTT180
LDKPCIVSAG  RLSIDKDFET  LIKGVCHLNT  KPFLYILGEG  SKRKDLENLI  KSLKLKDKVF240
LVGFIENPFP  YIKNCDIYIT  SSIRESFSMS  TLEAMALGKP  VISTNVVPFV  KDNFNSLVFK300
PKDYTTLANH  IDTLLSNEKL  REFLSKNAHE  TAKELSIDSM  CREYKNLIER  FKVENV356

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(182-322)

MLRIAHVVNT  LSGGGAERVA  VSVYNCLKEK  YKNEFIIAKN  IVKLNVNFKP  TIIFNKKPLL60
PSFLYEKLLL  YKLKEVLKDF  DVVISHLRDM  NTRLSYLKSK  NLLKPKLIIV  EHVPAELYSE120
KEKRIIKKYY  KYADLIVAVS  DKVRDDLIEY  FNLEPNKIQV  IYNGVDIESV  VKLSNAFQTT180
LDKPCIVSAG  RLSIDKDFET  LIKGVCHLNT  KPFLYILGEG  SKRKDLENLI  KSLKLKDKVF240
LVGFIENPFP  YIKNCDIYIT  SSIRESFSMS  TLEAMALGKP  VISTNVVPFV  KDNFNSLVFK300
PKDYTTLANH  IDTLLSNEKL  REFLSKNAHE  TAKELSIDSM  CREYKNLIER  FKVENV356

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help