CAZyme3D

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Entry ID

Information for CAZyme ID: ACD54708.1

Basic Information

GenBank IDACD54708.1
FamilyGH35
Sequence Length735
UniProt IDB3G4G0(100,100)Download
Average pLDDT?93.93
CAZy50 ID34428
CAZy50 RepYes, ACD54708.1
Structure ClusterSC_GH35_clus4
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID104782
KingdomEukaryota
PhylumRotifera
ClassEurotatoria
OrderAdinetida
FamilyAdinetidae
GenusAdineta
SpeciesAdineta vaga

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQLLTIVFFT  VLIFINTFAY  PVTYDQVRGI  PYRVSYDHRA  ITINGNRTLL  FSGVIHYPRS60
TPAMWPYLMS  KAKEQGLNTI  QTYVFWNIHE  QKRGTYDFSG  RANLSLFLQE  AANAGLFVNL120
RLGPYVCAEW  DYGALPVWLN  NIPNIAFRSS  NDAWKSEMKR  FLSDIIVYVD  GFLAKNGGPI180
ILAQIENEYG  GNDRAYVDWC  GSLVSNDFAS  TQIPWIMCNG  LAANSTIETC  NGCNCFDDGW240
MDRHRRTYPN  QPLLFTENWG  WFQGWGEGLG  IRTPEDLAYS  VAEWFANGGA  YHAYYMWHGG300
NHYGRTGGSG  LTTAYSDDVI  LRADGTPNEP  KFTHLNRLQR  LLASQAQVLL  SQDSNRLSIP360
YWNGKQWTVG  TQQMVYSYPP  SVQFVINQAA  FSLFVLFNKQ  NISIAGQSVQ  IYDYNEHLLW420
NSADVSGISR  NNTFLVPIVV  GPLDWQVYSE  PFTSDLPVIV  ASTPLEQLNL  TNDETIYLWY480
RRNVSLSQPS  VQTIVQVQTR  RANSLLFFMD  RQFVGYFDDH  SHTQGTINVN  ITLNLSQFLP540
NQQYIFEILS  VSLGIDNFNI  GPGSFEYKGI  VGNVSLGGQS  LVGDEASIWE  HQKGLFGEAH600
QIYTEQGSKT  VEWNPKWTTV  INKPVTWFQT  RFDLNHLARE  DLNANPILLD  AFGFNRGHAF660
VNGNDIGLYW  LIEGTCQNNL  CCCLQNQTNC  QQPSQRYYHI  SSDWLKPTNN  LLTVFEEIGA720
SSPKSVGLVQ  RIINT735

Predicted 3D structure by AlphaFold2 with pLDDT = 93.93 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQLLTIVFFT  VLIFINTFAY  PVTYDQVRGI  PYRVSYDHRA  ITINGNRTLL  FSGVIHYPRS60
TPAMWPYLMS  KAKEQGLNTI  QTYVFWNIHE  QKRGTYDFSG  RANLSLFLQE  AANAGLFVNL120
RLGPYVCAEW  DYGALPVWLN  NIPNIAFRSS  NDAWKSEMKR  FLSDIIVYVD  GFLAKNGGPI180
ILAQIENEYG  GNDRAYVDWC  GSLVSNDFAS  TQIPWIMCNG  LAANSTIETC  NGCNCFDDGW240
MDRHRRTYPN  QPLLFTENWG  WFQGWGEGLG  IRTPEDLAYS  VAEWFANGGA  YHAYYMWHGG300
NHYGRTGGSG  LTTAYSDDVI  LRADGTPNEP  KFTHLNRLQR  LLASQAQVLL  SQDSNRLSIP360
YWNGKQWTVG  TQQMVYSYPP  SVQFVINQAA  FSLFVLFNKQ  NISIAGQSVQ  IYDYNEHLLW420
NSADVSGISR  NNTFLVPIVV  GPLDWQVYSE  PFTSDLPVIV  ASTPLEQLNL  TNDETIYLWY480
RRNVSLSQPS  VQTIVQVQTR  RANSLLFFMD  RQFVGYFDDH  SHTQGTINVN  ITLNLSQFLP540
NQQYIFEILS  VSLGIDNFNI  GPGSFEYKGI  VGNVSLGGQS  LVGDEASIWE  HQKGLFGEAH600
QIYTEQGSKT  VEWNPKWTTV  INKPVTWFQT  RFDLNHLARE  DLNANPILLD  AFGFNRGHAF660
VNGNDIGLYW  LIEGTCQNNL  CCCLQNQTNC  QQPSQRYYHI  SSDWLKPTNN  LLTVFEEIGA720
SSPKSVGLVQ  RIINT735

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH35(42-338)

MQLLTIVFFT  VLIFINTFAY  PVTYDQVRGI  PYRVSYDHRA  ITINGNRTLL  FSGVIHYPRS60
TPAMWPYLMS  KAKEQGLNTI  QTYVFWNIHE  QKRGTYDFSG  RANLSLFLQE  AANAGLFVNL120
RLGPYVCAEW  DYGALPVWLN  NIPNIAFRSS  NDAWKSEMKR  FLSDIIVYVD  GFLAKNGGPI180
ILAQIENEYG  GNDRAYVDWC  GSLVSNDFAS  TQIPWIMCNG  LAANSTIETC  NGCNCFDDGW240
MDRHRRTYPN  QPLLFTENWG  WFQGWGEGLG  IRTPEDLAYS  VAEWFANGGA  YHAYYMWHGG300
NHYGRTGGSG  LTTAYSDDVI  LRADGTPNEP  KFTHLNRLQR  LLASQAQVLL  SQDSNRLSIP360
YWNGKQWTVG  TQQMVYSYPP  SVQFVINQAA  FSLFVLFNKQ  NISIAGQSVQ  IYDYNEHLLW420
NSADVSGISR  NNTFLVPIVV  GPLDWQVYSE  PFTSDLPVIV  ASTPLEQLNL  TNDETIYLWY480
RRNVSLSQPS  VQTIVQVQTR  RANSLLFFMD  RQFVGYFDDH  SHTQGTINVN  ITLNLSQFLP540
NQQYIFEILS  VSLGIDNFNI  GPGSFEYKGI  VGNVSLGGQS  LVGDEASIWE  HQKGLFGEAH600
QIYTEQGSKT  VEWNPKWTTV  INKPVTWFQT  RFDLNHLARE  DLNANPILLD  AFGFNRGHAF660
VNGNDIGLYW  LIEGTCQNNL  CCCLQNQTNC  QQPSQRYYHI  SSDWLKPTNN  LLTVFEEIGA720
SSPKSVGLVQ  RIINT735

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help