Information for CAZyme ID: ABX07205.1
Basic Information
| GenBank ID | ABX07205.1 |
| Family | CBM13 |
| Sequence Length | 672 |
| UniProt ID | A9B0I7(100,100) |
| Average pLDDT? | 58.70 |
| CAZy50 ID | 42120 |
| CAZy50 Rep | Yes, ABX07205.1 |
| Structure Cluster | SC_CBM13_clus48, SC_CBM13_clus59, SC_CBM13_clus67 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 316274 |
| Kingdom | Bacteria |
| Phylum | Chloroflexota |
| Class | Chloroflexia |
| Order | Herpetosiphonales |
| Family | Herpetosiphonaceae |
| Genus | Herpetosiphon |
| Species | Herpetosiphon aurantiacus |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MIGFNHRHWR WGLVLSCLSS LLVGAMLTQP TRAAEPVAVN AEGYTTRSYG SVTFEGINYA | 60 |
| VQSNVANEYV PSTTHSYSDL GSYYLVNSDY SLPNVPNITS GVLWSTGNKN RGWAINSEYD | 120 |
| IRALVQANGG LYAPYQTMPG YQLGPWNAST PCCGWTLQRN TTGFYIQADG KVRVPKTPAA | 180 |
| AQQTWDANQS LTAINTTNDI VAVTDVMFPG DEDYYAGNTY LPRSAGVLTA KYKHYDNRNT | 240 |
| HIYWGLKGQH VRDVEDWEAD APGGSKRKIY TGGFKIDESD NGQVWAGISH GNEFVDLNLQ | 300 |
| PSVTAQQLYK VELWIQRPTG MEYWGGLSYQ QGADGKWRAF GDGSHVTNWG NGTFGLVATA | 360 |
| YRNRNERLLL VYRALPGGDN PPTPTPPPPP PTNAASFNLI NRSSGLCLDV AGANAADGTK | 420 |
| VQQWTCNNAT AQQWELRLAE SGYYQLVSKA TGKCLDLAAW STTDGGIAHQ WSCGNNQSNQ | 480 |
| QWNFQTVSDG WLRIANRNSS KYLSIVYGSV DAGAATHQWP WLGNPDQQWR IQPVGTLQIA | 540 |
| NKNSNKCIDV ANNNSADGTN ILQWPCYAGL AQQWQFQHSD NGYYKLRHPS SGKMLSVSGD | 600 |
| SNADGANIHL WTAVSNPSQQ WRLELLDDGF MRFVNRATGK VVDVAGGSSA DNANIQQWTW | 660 |
| NSSNAQRFKL TN | 672 |
Predicted 3D structure by AlphaFold2 with pLDDT = 58.70 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MIGFNHRHWR WGLVLSCLSS LLVGAMLTQP TRAAEPVAVN AEGYTTRSYG SVTFEGINYA | 60 |
| VQSNVANEYV PSTTHSYSDL GSYYLVNSDY SLPNVPNITS GVLWSTGNKN RGWAINSEYD | 120 |
| IRALVQANGG LYAPYQTMPG YQLGPWNAST PCCGWTLQRN TTGFYIQADG KVRVPKTPAA | 180 |
| AQQTWDANQS LTAINTTNDI VAVTDVMFPG DEDYYAGNTY LPRSAGVLTA KYKHYDNRNT | 240 |
| HIYWGLKGQH VRDVEDWEAD APGGSKRKIY TGGFKIDESD NGQVWAGISH GNEFVDLNLQ | 300 |
| PSVTAQQLYK VELWIQRPTG MEYWGGLSYQ QGADGKWRAF GDGSHVTNWG NGTFGLVATA | 360 |
| YRNRNERLLL VYRALPGGDN PPTPTPPPPP PTNAASFNLI NRSSGLCLDV AGANAADGTK | 420 |
| VQQWTCNNAT AQQWELRLAE SGYYQLVSKA TGKCLDLAAW STTDGGIAHQ WSCGNNQSNQ | 480 |
| QWNFQTVSDG WLRIANRNSS KYLSIVYGSV DAGAATHQWP WLGNPDQQWR IQPVGTLQIA | 540 |
| NKNSNKCIDV ANNNSADGTN ILQWPCYAGL AQQWQFQHSD NGYYKLRHPS SGKMLSVSGD | 600 |
| SNADGANIHL WTAVSNPSQQ WRLELLDDGF MRFVNRATGK VVDVAGGSSA DNANIQQWTW | 660 |
| NSSNAQRFKL TN | 672 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.