CAZyme3D

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Entry ID

Information for CAZyme ID: ABW39350.1

Basic Information

GenBank IDABW39350.1
FamilyGH5_2
Sequence Length348
UniProt IDA9LDU4(100,100)Download
Average pLDDT?93.56
CAZy50 ID133128
CAZy50 RepYes, ABW39350.1
Structure ClusterSC_GH5_clus305
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID77133
KingdomBacteria
Phylum
Class
Order
Family
Genus
Speciesuncultured bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEGSMRGRIL  QAQFAALIIL  AGFLLLSCEN  DRLVSVDKRG  RTVVERFGQL  RVEGTKLLAA60
DGKPVQLRGI  SSAGLQYAGK  YANEEVLRWL  RDDWNMQVWR  AALYLSEGGY  ISQRSLKSKV120
VDSVEAAIKL  GLYVIIDWHV  HLDRDPRMYQ  QYSIEFFGEM  AQRYGSYPNV  LYEICNEPNG180
QDVTWSGAVK  PYAEAVIAEI  RKYDPNNIII  VGTPTWSQDV  DKAAEDPIRS  SANIMYTLHF240
YAGTHGDELR  NKAKTAIDKG  LPLFVTECGT  SQATGGGGVY  EEKYLEWLSF  LKKNQISWVN300
WSLTNKGEDS  GILVMNADRE  GKGGWTDNQL  SQSGKFIRKI  LRNEVKVK348

Predicted 3D structure by AlphaFold2 with pLDDT = 93.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEGSMRGRIL  QAQFAALIIL  AGFLLLSCEN  DRLVSVDKRG  RTVVERFGQL  RVEGTKLLAA60
DGKPVQLRGI  SSAGLQYAGK  YANEEVLRWL  RDDWNMQVWR  AALYLSEGGY  ISQRSLKSKV120
VDSVEAAIKL  GLYVIIDWHV  HLDRDPRMYQ  QYSIEFFGEM  AQRYGSYPNV  LYEICNEPNG180
QDVTWSGAVK  PYAEAVIAEI  RKYDPNNIII  VGTPTWSQDV  DKAAEDPIRS  SANIMYTLHF240
YAGTHGDELR  NKAKTAIDKG  LPLFVTECGT  SQATGGGGVY  EEKYLEWLSF  LKKNQISWVN300
WSLTNKGEDS  GILVMNADRE  GKGGWTDNQL  SQSGKFIRKI  LRNEVKVK348

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_2(61-300)

MEGSMRGRIL  QAQFAALIIL  AGFLLLSCEN  DRLVSVDKRG  RTVVERFGQL  RVEGTKLLAA60
DGKPVQLRGI  SSAGLQYAGK  YANEEVLRWL  RDDWNMQVWR  AALYLSEGGY  ISQRSLKSKV120
VDSVEAAIKL  GLYVIIDWHV  HLDRDPRMYQ  QYSIEFFGEM  AQRYGSYPNV  LYEICNEPNG180
QDVTWSGAVK  PYAEAVIAEI  RKYDPNNIII  VGTPTWSQDV  DKAAEDPIRS  SANIMYTLHF240
YAGTHGDELR  NKAKTAIDKG  LPLFVTECGT  SQATGGGGVY  EEKYLEWLSF  LKKNQISWVN300
WSLTNKGEDS  GILVMNADRE  GKGGWTDNQL  SQSGKFIRKI  LRNEVKVK348

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help