CAZyme3D

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Entry ID

Information for CAZyme ID: ABV33296.1

Basic Information

GenBank IDABV33296.1
FamilyGT26
Sequence Length241
UniProt IDA8F562(100,100)Download
Average pLDDT?90.58
CAZy50 ID174062
CAZy50 RepYes, ABV33296.1
Structure ClusterSC_GT26_clus16
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID416591
KingdomBacteria
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyThermotogaceae
GenusPseudothermotoga
SpeciesPseudothermotoga lettingae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEKFTLFDLT  ISTPTLIELV  EILSRRISNN  EKTFVVTANA  SIIVKTTEDE  RYKFAVQNAD60
IIVPDGIGVI  WALKKIYRRK  AVRVTGIDTM  MALCDKARAS  GWKIYLLGAK  IDVVEKAARN120
LTEKFGNIVC  GYHHGYFEKE  GPLEQIKQAK  PDLIFVGMGV  PKQEIWIYEN  FRKTTAKLAM180
GVGGSFDVIS  GIKKRAPNFI  QRARLEWLYR  FLQSPLEKKN  VPKDISKFIG  LVLSQAKQYK240
Y241

Predicted 3D structure by AlphaFold2 with pLDDT = 90.58 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEKFTLFDLT  ISTPTLIELV  EILSRRISNN  EKTFVVTANA  SIIVKTTEDE  RYKFAVQNAD60
IIVPDGIGVI  WALKKIYRRK  AVRVTGIDTM  MALCDKARAS  GWKIYLLGAK  IDVVEKAARN120
LTEKFGNIVC  GYHHGYFEKE  GPLEQIKQAK  PDLIFVGMGV  PKQEIWIYEN  FRKTTAKLAM180
GVGGSFDVIS  GIKKRAPNFI  QRARLEWLYR  FLQSPLEKKN  VPKDISKFIG  LVLSQAKQYK240
Y241

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT26(56-215)

MEKFTLFDLT  ISTPTLIELV  EILSRRISNN  EKTFVVTANA  SIIVKTTEDE  RYKFAVQNAD60
IIVPDGIGVI  WALKKIYRRK  AVRVTGIDTM  MALCDKARAS  GWKIYLLGAK  IDVVEKAARN120
LTEKFGNIVC  GYHHGYFEKE  GPLEQIKQAK  PDLIFVGMGV  PKQEIWIYEN  FRKTTAKLAM180
GVGGSFDVIS  GIKKRAPNFI  QRARLEWLYR  FLQSPLEKKN  VPKDISKFIG  LVLSQAKQYK240
Y241

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help