CAZyme3D

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Entry ID

Information for CAZyme ID: ABQ27384.1

Basic Information

GenBank IDABQ27384.1
FamilyGT0
Sequence Length326
UniProt IDA5G6G6(100,100)Download
Average pLDDT?94.07
CAZy50 ID144063
CAZy50 RepYes, ABQ27384.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID351605
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderGeobacterales
FamilyGeobacteraceae
GenusGeotalea
SpeciesGeotalea uraniireducens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSKERIAIIL  PNRIGDALLS  LPAILCLKQL  INAHAPDHYA  VTLYTHVPVV  DIVTAANLFD60
IKSVNLSAKI  NSWLHPADKA  FFLTTTSKHF  GFHAKKTYGL  MLQNKKFIRY  SVDMSCLNFS120
PESSGLPADL  VTFLQERHGL  PFYAVRLFGI  CLELGFTVDQ  ICSSFNYSGK  SLLLADEFFD180
WRPPVDASYL  VVCMEAAYGG  VRHNSDRRWQ  EGCYFDIAER  VYRQHGCRSI  FIGINTQPSL240
PVRDYFIDLR  GKLNLKQLAQ  TLHASRGYVG  NDTGPLHVAN  LVRKPSLGIY  FRDDYHAPLF300
GDYNTVVMRP  QSPQEVYPLI  DRLLGS326

Predicted 3D structure by AlphaFold2 with pLDDT = 94.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSKERIAIIL  PNRIGDALLS  LPAILCLKQL  INAHAPDHYA  VTLYTHVPVV  DIVTAANLFD60
IKSVNLSAKI  NSWLHPADKA  FFLTTTSKHF  GFHAKKTYGL  MLQNKKFIRY  SVDMSCLNFS120
PESSGLPADL  VTFLQERHGL  PFYAVRLFGI  CLELGFTVDQ  ICSSFNYSGK  SLLLADEFFD180
WRPPVDASYL  VVCMEAAYGG  VRHNSDRRWQ  EGCYFDIAER  VYRQHGCRSI  FIGINTQPSL240
PVRDYFIDLR  GKLNLKQLAQ  TLHASRGYVG  NDTGPLHVAN  LVRKPSLGIY  FRDDYHAPLF300
GDYNTVVMRP  QSPQEVYPLI  DRLLGS326

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT9(185-303)

MSKERIAIIL  PNRIGDALLS  LPAILCLKQL  INAHAPDHYA  VTLYTHVPVV  DIVTAANLFD60
IKSVNLSAKI  NSWLHPADKA  FFLTTTSKHF  GFHAKKTYGL  MLQNKKFIRY  SVDMSCLNFS120
PESSGLPADL  VTFLQERHGL  PFYAVRLFGI  CLELGFTVDQ  ICSSFNYSGK  SLLLADEFFD180
WRPPVDASYL  VVCMEAAYGG  VRHNSDRRWQ  EGCYFDIAER  VYRQHGCRSI  FIGINTQPSL240
PVRDYFIDLR  GKLNLKQLAQ  TLHASRGYVG  NDTGPLHVAN  LVRKPSLGIY  FRDDYHAPLF300
GDYNTVVMRP  QSPQEVYPLI  DRLLGS326

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help