Information for CAZyme ID: ABO96090.1
Basic Information
| GenBank ID | ABO96090.1 |
| Family | GT60 |
| Sequence Length | 819 |
| UniProt ID | A4RXQ3(100,100) |
| Average pLDDT? | 76.79 |
| CAZy50 ID | 25539 |
| CAZy50 Rep | Yes, ABO96090.1 |
| Structure Cluster | SC_GT60_clus12 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 436017 |
| Kingdom | Eukaryota |
| Phylum | Chlorophyta |
| Class | Mamiellophyceae |
| Order | Mamiellales |
| Family | Bathycoccaceae |
| Genus | Ostreococcus |
| Species | Ostreococcus sp. 'lucimarinus' |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MANQSACALA VEAWDDAMER AERAIACDEG YAKAHARRAA ALRGKREYAR ARESLKVCRA | 60 |
| LLAREGETKM IRDVDAMVAE IDADEARGEQ AARVGMQVKM GSKAQAKPNF SAATTKAKKV | 120 |
| VTFDPKLDID CDEDVFDSRA SQPPSRRSSS KPMLMDLGVL AVEKAIEMQR AVVEARVEGG | 180 |
| FEHKRCKMCG NVCHAKLTAC SSCCLPLVSV DSYEPATLPR AGAEAIYESD SDDGEENATT | 240 |
| TSAEKDAEPS YLDSDPWWVR YYTRSALTEP THSRGLDPAL RSSYAALDVA PGSDEVTVRA | 300 |
| AFRNALARAH PDAGGSAKEL DVVARAYDAI SLDFWRHDEG AARLRLQSRR LADGSIEFFD | 360 |
| SANEDIFVVL EVYRNREAEH TLKRLFSEAS DPSRVYVGVT WQYKSTTPPP DALGARIDRL | 420 |
| HTNVYVLTEE IQKRAADVKD PVEQEKYLTK MRRLQLKAQR TEDAEEKRCH SARVLEARFR | 480 |
| DHVRETHMPW DASEGPSYAR HLAMRKWGGE KYVLHIDAMT VVDKGWDEIL VSELERCGDD | 540 |
| KRVLTAAPLG YELKTQPVVE EETFRQMYQT DVYGTIKDRL PAVSALGEID PARAPAITCA | 600 |
| REFGESLFRT HARQLAEVPS EPTPALFFNS SFAFARAEAF VRDAPPDAHA PFLHLGEDLS | 660 |
| ASARLYTRGW NLCTPARVPV LRCYSNAPRA MWMEDHRSGK MLYADARFGV GNESDAARRE | 720 |
| FLNLLSRRRV LQLVAAADDS SQTSRDDPVR FTRAYGAGRD RSIESFIEHI GVDFTAKRIS | 780 |
| TRAACGGHDG AFVASSKSLP APFASARTGP SERAARRYV | 819 |
Predicted 3D structure by AlphaFold2 with pLDDT = 76.79 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MANQSACALA VEAWDDAMER AERAIACDEG YAKAHARRAA ALRGKREYAR ARESLKVCRA | 60 |
| LLAREGETKM IRDVDAMVAE IDADEARGEQ AARVGMQVKM GSKAQAKPNF SAATTKAKKV | 120 |
| VTFDPKLDID CDEDVFDSRA SQPPSRRSSS KPMLMDLGVL AVEKAIEMQR AVVEARVEGG | 180 |
| FEHKRCKMCG NVCHAKLTAC SSCCLPLVSV DSYEPATLPR AGAEAIYESD SDDGEENATT | 240 |
| TSAEKDAEPS YLDSDPWWVR YYTRSALTEP THSRGLDPAL RSSYAALDVA PGSDEVTVRA | 300 |
| AFRNALARAH PDAGGSAKEL DVVARAYDAI SLDFWRHDEG AARLRLQSRR LADGSIEFFD | 360 |
| SANEDIFVVL EVYRNREAEH TLKRLFSEAS DPSRVYVGVT WQYKSTTPPP DALGARIDRL | 420 |
| HTNVYVLTEE IQKRAADVKD PVEQEKYLTK MRRLQLKAQR TEDAEEKRCH SARVLEARFR | 480 |
| DHVRETHMPW DASEGPSYAR HLAMRKWGGE KYVLHIDAMT VVDKGWDEIL VSELERCGDD | 540 |
| KRVLTAAPLG YELKTQPVVE EETFRQMYQT DVYGTIKDRL PAVSALGEID PARAPAITCA | 600 |
| REFGESLFRT HARQLAEVPS EPTPALFFNS SFAFARAEAF VRDAPPDAHA PFLHLGEDLS | 660 |
| ASARLYTRGW NLCTPARVPV LRCYSNAPRA MWMEDHRSGK MLYADARFGV GNESDAARRE | 720 |
| FLNLLSRRRV LQLVAAADDS SQTSRDDPVR FTRAYGAGRD RSIESFIEHI GVDFTAKRIS | 780 |
| TRAACGGHDG AFVASSKSLP APFASARTGP SERAARRYV | 819 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.