Information for CAZyme ID: ABK35071.1
Basic Information
| GenBank ID | ABK35071.1 |
| Family | GT2 |
| Sequence Length | 408 |
| UniProt ID | A7YG90(100,100) |
| Average pLDDT? | 68.30 |
| CAZy50 ID | 94464 |
| CAZy50 Rep | Yes, ABK35071.1 |
| Structure Cluster | SC_GT2_clus645 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 109871 |
| Kingdom | Eukaryota |
| Phylum | Chytridiomycota |
| Class | Chytridiomycetes |
| Order | Rhizophydiales |
| Family | |
| Genus | Batrachochytrium |
| Species | Batrachochytrium dendrobatidis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| RSPTKSVPLL IAPGIVEDYS LNRVDTLHVK NLLQLGEDRY LTTLMMKHFP NLKLSFNPDA | 60 |
| QCRTNAPDRW KVLLSQRRRW INSTVHNLIE LLSLEQMCGF CCFSMRFVVF LDLFSTVVQP | 120 |
| AGVLYIAYLV YSLITSPDVF PTISIVMLAA VYGFQVIIFV LKRQWAQIGW MIVYILATPV | 180 |
| FGFYIPIYSF WRFDDFSWGN TRIVLGERGG HAKGSTKEFD PKTIPLKKWA DVDYDKWDGQ | 240 |
| SQVSGGLSSC TGVYPPSNSN SIKKSNRLTL TVPVPGYLKY GDGGMLGSAR SPQLNSAGTG | 300 |
| SSMPSIRADI KDPLLPQGEP LNRQIPSPLP FAPPAQHAPR YDHQAGNLTV PTDEDIIREL | 360 |
| RNVLATVDLM VVTKRHVRDD VSRRLGVDLS SRRSNINMFM DQILHGKL | 408 |
Predicted 3D structure by AlphaFold2 with pLDDT = 68.30 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| RSPTKSVPLL IAPGIVEDYS LNRVDTLHVK NLLQLGEDRY LTTLMMKHFP NLKLSFNPDA | 60 |
| QCRTNAPDRW KVLLSQRRRW INSTVHNLIE LLSLEQMCGF CCFSMRFVVF LDLFSTVVQP | 120 |
| AGVLYIAYLV YSLITSPDVF PTISIVMLAA VYGFQVIIFV LKRQWAQIGW MIVYILATPV | 180 |
| FGFYIPIYSF WRFDDFSWGN TRIVLGERGG HAKGSTKEFD PKTIPLKKWA DVDYDKWDGQ | 240 |
| SQVSGGLSSC TGVYPPSNSN SIKKSNRLTL TVPVPGYLKY GDGGMLGSAR SPQLNSAGTG | 300 |
| SSMPSIRADI KDPLLPQGEP LNRQIPSPLP FAPPAQHAPR YDHQAGNLTV PTDEDIIREL | 360 |
| RNVLATVDLM VVTKRHVRDD VSRRLGVDLS SRRSNINMFM DQILHGKL | 408 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.