Information for CAZyme ID: ABK01942.1
Basic Information
| GenBank ID | ABK01942.1 |
| Family | GH33 |
| Sequence Length | 1015 |
| UniProt ID | A0JSC2(100,100) |
| Average pLDDT? | 89.02 |
| CAZy50 ID | 13657 |
| CAZy50 Rep | Yes, ABK01942.1 |
| Structure Cluster | SC_GH33_clus40 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 290399 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Micrococcaceae |
| Genus | Arthrobacter |
| Species | Arthrobacter sp. FB24 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MWDKSLCPTR FRTAALGRLP ERTVDLKLKK REPAGRAGSV GRVAAAGLLG MALIAGPGLP | 60 |
| ARAEPAPPSN PAAAPGTFAE ANIAADRTAA NFFYRIPALT YLGNDVVLAA WDGRPGSSAD | 120 |
| APNPNSIVQR RSIDGGATWG PLTVIAAGHV ADASGPKYGF SDPSYIYDAE ANKVFALFVY | 180 |
| SKDAGFSAST YGNDDADRNV ISSAVVESAD EGRTWSQPRF ITSVTKPGSS KTNPQPGDVR | 240 |
| TNFAASGEGI QLKYGAHKGR LIQQYSGYVR QANGSELFQA YSVYSDDHGA TWHKGAPIGD | 300 |
| RMDENKTVEL SDGRVLLNSR DSGNGGYRKV AVSTDGGASY GPVTQDTELP DPANNGSISR | 360 |
| MYPAAPEGSA EARKLIFTNS NSKAARENVS ARVSCDDGAT WPGVRTIRPG FSAYSTITRL | 420 |
| AEGKFGVLYE ANYTDNIQFA SFDDAWLNYV CAPVNVPAQT IAPGVAQQVP VTVTNQEAHV | 480 |
| LSGARASIYT PAGWSAATVD VPDLATGSSA TVNVQLTPPA GASGPTSLNA AFTTADGRVS | 540 |
| QYTFVANSPV APQVGLTIAG SAPARDVAAN PYKEGEVLSY TFAVKSTSNV TSNAVPLSGT | 600 |
| FETGFLPPSA PNCRYNNLAA GASYNCTTPK HTLTPEDIAR GYLVPVAEFT VTASGNTALT | 660 |
| KAVSFKGAAV PLRDGLLAGS ISGARNDAGR DLAVQPYAAG EQVPYTFTVS NTGPLAADVV | 720 |
| PIAGNFSPLV PPGAGNCRWL NLAAGGSYAC STPRHTVTQK EAEEGFFRAD STWTVAASGQ | 780 |
| SSREYRVDGG EVDLAIRNPK LDGTISAEWA DADGDRYASA GDSVTYTYGV GNAGNVALTG | 840 |
| VTATDAGISV DRLGIGETAT ATRVHILTPA DIAAGQLPAS PFAASASNGS RNVRVDVQAG | 900 |
| AVALRLQPAK PAAVPVLTVQ DFDGQVPPVD LDTNEKYRNG EKVTLRGLPH GQWYYVYLNK | 960 |
| HGFRLGWIFP TTADTVEFLL PSTVQNGRDD VVVLDSEGKQ VSFDRLQVTP KGSIG | 1015 |
Predicted 3D structure by AlphaFold2 with pLDDT = 89.02 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MWDKSLCPTR FRTAALGRLP ERTVDLKLKK REPAGRAGSV GRVAAAGLLG MALIAGPGLP | 60 |
| ARAEPAPPSN PAAAPGTFAE ANIAADRTAA NFFYRIPALT YLGNDVVLAA WDGRPGSSAD | 120 |
| APNPNSIVQR RSIDGGATWG PLTVIAAGHV ADASGPKYGF SDPSYIYDAE ANKVFALFVY | 180 |
| SKDAGFSAST YGNDDADRNV ISSAVVESAD EGRTWSQPRF ITSVTKPGSS KTNPQPGDVR | 240 |
| TNFAASGEGI QLKYGAHKGR LIQQYSGYVR QANGSELFQA YSVYSDDHGA TWHKGAPIGD | 300 |
| RMDENKTVEL SDGRVLLNSR DSGNGGYRKV AVSTDGGASY GPVTQDTELP DPANNGSISR | 360 |
| MYPAAPEGSA EARKLIFTNS NSKAARENVS ARVSCDDGAT WPGVRTIRPG FSAYSTITRL | 420 |
| AEGKFGVLYE ANYTDNIQFA SFDDAWLNYV CAPVNVPAQT IAPGVAQQVP VTVTNQEAHV | 480 |
| LSGARASIYT PAGWSAATVD VPDLATGSSA TVNVQLTPPA GASGPTSLNA AFTTADGRVS | 540 |
| QYTFVANSPV APQVGLTIAG SAPARDVAAN PYKEGEVLSY TFAVKSTSNV TSNAVPLSGT | 600 |
| FETGFLPPSA PNCRYNNLAA GASYNCTTPK HTLTPEDIAR GYLVPVAEFT VTASGNTALT | 660 |
| KAVSFKGAAV PLRDGLLAGS ISGARNDAGR DLAVQPYAAG EQVPYTFTVS NTGPLAADVV | 720 |
| PIAGNFSPLV PPGAGNCRWL NLAAGGSYAC STPRHTVTQK EAEEGFFRAD STWTVAASGQ | 780 |
| SSREYRVDGG EVDLAIRNPK LDGTISAEWA DADGDRYASA GDSVTYTYGV GNAGNVALTG | 840 |
| VTATDAGISV DRLGIGETAT ATRVHILTPA DIAAGQLPAS PFAASASNGS RNVRVDVQAG | 900 |
| AVALRLQPAK PAAVPVLTVQ DFDGQVPPVD LDTNEKYRNG EKVTLRGLPH GQWYYVYLNK | 960 |
| HGFRLGWIFP TTADTVEFLL PSTVQNGRDD VVVLDSEGKQ VSFDRLQVTP KGSIG | 1015 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.