CAZyme3D

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Entry ID

Information for CAZyme ID: ABI64548.1

Basic Information

GenBank IDABI64548.1
FamilyPL6_1
Sequence Length740
UniProt IDQ0AT39(100,100)Download
Average pLDDT?93.32
CAZy50 ID33839
CAZy50 RepYes, ABI64548.1
Structure ClusterSC_PL6_clus22
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID394221
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderMaricaulales
FamilyMaricaulaceae
GenusMaricaulis
SpeciesMaricaulis maris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTRTRPQSSW  LLRSAVLLLA  ALAWQPASAS  ATDYLVNDQQ  AYEAALDRVE  PGDRIVLADG60
VWEDFEIVFE  ATGTAQAPIY  LMAQTPGQVI  LTGQSNLRIG  GSHLVVWGLT  FRDGHSPTSE120
VIAFRRDSRT  LANHTRLVET  VIEDFNQPDR  EMQDSWVVVY  GQNNRIDRNA  FVGKTNRGPT180
MVVRLNSEGS  QNNNHVIENN  YFGPRPPLGG  NGGETLRIGV  SQYSRIHSGT  IVRRNYFDRC240
DGEVEIISIK  SEGNLITENV  FYESRGSVVF  RHGGRNEVSR  NVFFGNGVSD  TGGIRVINDN300
QVVRDNYLEG  LRGRKFLGAL  VVMNGVPNSP  ENRYHQVDGA  VISQNSFVDV  LELGFAVGSD360
EERSAPPINS  EMTRNILLSD  EQEPVAIFDD  VSGIRFADNV  ANNRRFDVIG  STALADFTLS420
RHENGLVYMQ  SDALDGPVGA  PLDLQPIARS  QTGPRYYDKP  AQTRQDGAAV  EVEADEAALL480
QAIAEAEHGD  IIRLGGGDIA  LSGPILVDQA  IAIEGSDDTR  LIASPGGLFR  LLAGGELTLR540
GLTLRQESAE  TALIHGAGDR  YRGAYRLHLE  DVSLEAGTTG  AVAPLLAADS  TTFAQLVTLT600
GLQVTNWPGA  IIELSGDGLD  GWYLADEIRI  EDSSFRTIGG  PLVRFGREGR  DESTFGPRFS660
LTGSTLAGVA  EDGAAIALNG  IDQLHLTGNQ  IAETGTFQIR  RRVLGWPFEI  GGNDVDAQAS720
LNLLGVDGEA  LDASLSGDSQ  740

Predicted 3D structure by AlphaFold2 with pLDDT = 93.32 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTRTRPQSSW  LLRSAVLLLA  ALAWQPASAS  ATDYLVNDQQ  AYEAALDRVE  PGDRIVLADG60
VWEDFEIVFE  ATGTAQAPIY  LMAQTPGQVI  LTGQSNLRIG  GSHLVVWGLT  FRDGHSPTSE120
VIAFRRDSRT  LANHTRLVET  VIEDFNQPDR  EMQDSWVVVY  GQNNRIDRNA  FVGKTNRGPT180
MVVRLNSEGS  QNNNHVIENN  YFGPRPPLGG  NGGETLRIGV  SQYSRIHSGT  IVRRNYFDRC240
DGEVEIISIK  SEGNLITENV  FYESRGSVVF  RHGGRNEVSR  NVFFGNGVSD  TGGIRVINDN300
QVVRDNYLEG  LRGRKFLGAL  VVMNGVPNSP  ENRYHQVDGA  VISQNSFVDV  LELGFAVGSD360
EERSAPPINS  EMTRNILLSD  EQEPVAIFDD  VSGIRFADNV  ANNRRFDVIG  STALADFTLS420
RHENGLVYMQ  SDALDGPVGA  PLDLQPIARS  QTGPRYYDKP  AQTRQDGAAV  EVEADEAALL480
QAIAEAEHGD  IIRLGGGDIA  LSGPILVDQA  IAIEGSDDTR  LIASPGGLFR  LLAGGELTLR540
GLTLRQESAE  TALIHGAGDR  YRGAYRLHLE  DVSLEAGTTG  AVAPLLAADS  TTFAQLVTLT600
GLQVTNWPGA  IIELSGDGLD  GWYLADEIRI  EDSSFRTIGG  PLVRFGREGR  DESTFGPRFS660
LTGSTLAGVA  EDGAAIALNG  IDQLHLTGNQ  IAETGTFQIR  RRVLGWPFEI  GGNDVDAQAS720
LNLLGVDGEA  LDASLSGDSQ  740

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL6(34-403)+PL6_1(475-670)

MTRTRPQSSW  LLRSAVLLLA  ALAWQPASAS  ATDYLVNDQQ  AYEAALDRVE  PGDRIVLADG60
VWEDFEIVFE  ATGTAQAPIY  LMAQTPGQVI  LTGQSNLRIG  GSHLVVWGLT  FRDGHSPTSE120
VIAFRRDSRT  LANHTRLVET  VIEDFNQPDR  EMQDSWVVVY  GQNNRIDRNA  FVGKTNRGPT180
MVVRLNSEGS  QNNNHVIENN  YFGPRPPLGG  NGGETLRIGV  SQYSRIHSGT  IVRRNYFDRC240
DGEVEIISIK  SEGNLITENV  FYESRGSVVF  RHGGRNEVSR  NVFFGNGVSD  TGGIRVINDN300
QVVRDNYLEG  LRGRKFLGAL  VVMNGVPNSP  ENRYHQVDGA  VISQNSFVDV  LELGFAVGSD360
EERSAPPINS  EMTRNILLSD  EQEPVAIFDD  VSGIRFADNV  ANNRRFDVIG  STALADFTLS420
RHENGLVYMQ  SDALDGPVGA  PLDLQPIARS  QTGPRYYDKP  AQTRQDGAAV  EVEADEAALL480
QAIAEAEHGD  IIRLGGGDIA  LSGPILVDQA  IAIEGSDDTR  LIASPGGLFR  LLAGGELTLR540
GLTLRQESAE  TALIHGAGDR  YRGAYRLHLE  DVSLEAGTTG  AVAPLLAADS  TTFAQLVTLT600
GLQVTNWPGA  IIELSGDGLD  GWYLADEIRI  EDSSFRTIGG  PLVRFGREGR  DESTFGPRFS660
LTGSTLAGVA  EDGAAIALNG  IDQLHLTGNQ  IAETGTFQIR  RRVLGWPFEI  GGNDVDAQAS720
LNLLGVDGEA  LDASLSGDSQ  740

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help