CAZyme3D

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Entry ID

Information for CAZyme ID: ABI29879.1

Basic Information

GenBank IDABI29879.1
FamilyCBM14, GH18
Sequence Length466
UniProt IDQ0GFB1(100,100)Download
Average pLDDT?88.79
CAZy50 ID76341
CAZy50 RepYes, ABI29879.1
Structure ClusterSC_CBM14_clus8, SC_GH18_clus298
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID7370
KingdomEukaryota
PhylumArthropoda
ClassInsecta
OrderDiptera
FamilyMuscidae
GenusMusca
SpeciesMusca domestica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFQIKLAVSL  FILASLGAMV  NAKKMVNCYY  GTWAKYRTGN  GNFEAENIDP  FLCTHISYSF60
FGIDGASGRF  KSLDTWLDMD  TGLGMIRKTM  QLKSKNPNLK  ILAVVGGWNE  GSDKFSAMAA120
DPHKRKAFID  SSLAFIKQYG  FDGLDIDWEY  PAQREGSSPR  DKQNFVTLLK  ELKNALSPLN180
LELGIAVGAS  ATTAAISYDI  PNIAKYVDFI  NVMTYDFHNQ  ATLSYNSPLK  GQGENNVESA240
IKYWLNAGAP  ASKLIMGLAF  YGRHFAYAQQ  PQAGAPQLGE  GTPGPYTQQR  GFLGYNEICQ300
LKNSGYNFQF  DNAHGVPYAY  NGNQWIGFDD  AKSIAMKVQL  ANTLNLGGAM  VWSLESDDFR360
GECGEKYVLL  NALNSALGGS  SSWNPNPPQT  VTTRKPSVVV  TSAPVVSKPN  APAGCSSDGY420
FANQSDCNRF  YQCSGGVRYE  YNCAAGLHFD  TVSLSCTWPG  QANCGN466

Predicted 3D structure by AlphaFold2 with pLDDT = 88.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MFQIKLAVSL  FILASLGAMV  NAKKMVNCYY  GTWAKYRTGN  GNFEAENIDP  FLCTHISYSF60
FGIDGASGRF  KSLDTWLDMD  TGLGMIRKTM  QLKSKNPNLK  ILAVVGGWNE  GSDKFSAMAA120
DPHKRKAFID  SSLAFIKQYG  FDGLDIDWEY  PAQREGSSPR  DKQNFVTLLK  ELKNALSPLN180
LELGIAVGAS  ATTAAISYDI  PNIAKYVDFI  NVMTYDFHNQ  ATLSYNSPLK  GQGENNVESA240
IKYWLNAGAP  ASKLIMGLAF  YGRHFAYAQQ  PQAGAPQLGE  GTPGPYTQQR  GFLGYNEICQ300
LKNSGYNFQF  DNAHGVPYAY  NGNQWIGFDD  AKSIAMKVQL  ANTLNLGGAM  VWSLESDDFR360
GECGEKYVLL  NALNSALGGS  SSWNPNPPQT  VTTRKPSVVV  TSAPVVSKPN  APAGCSSDGY420
FANQSDCNRF  YQCSGGVRYE  YNCAAGLHFD  TVSLSCTWPG  QANCGN466

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(24-367)+CBM14(418-464)

MFQIKLAVSL  FILASLGAMV  NAKKMVNCYY  GTWAKYRTGN  GNFEAENIDP  FLCTHISYSF60
FGIDGASGRF  KSLDTWLDMD  TGLGMIRKTM  QLKSKNPNLK  ILAVVGGWNE  GSDKFSAMAA120
DPHKRKAFID  SSLAFIKQYG  FDGLDIDWEY  PAQREGSSPR  DKQNFVTLLK  ELKNALSPLN180
LELGIAVGAS  ATTAAISYDI  PNIAKYVDFI  NVMTYDFHNQ  ATLSYNSPLK  GQGENNVESA240
IKYWLNAGAP  ASKLIMGLAF  YGRHFAYAQQ  PQAGAPQLGE  GTPGPYTQQR  GFLGYNEICQ300
LKNSGYNFQF  DNAHGVPYAY  NGNQWIGFDD  AKSIAMKVQL  ANTLNLGGAM  VWSLESDDFR360
GECGEKYVLL  NALNSALGGS  SSWNPNPPQT  VTTRKPSVVV  TSAPVVSKPN  APAGCSSDGY420
FANQSDCNRF  YQCSGGVRYE  YNCAAGLHFD  TVSLSCTWPG  QANCGN466

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help