CAZyme3D

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Entry ID

Information for CAZyme ID: ABG60100.1

Basic Information

GenBank IDABG60100.1
FamilyGH8
Sequence Length1152
UniProt IDA0A6N4SUL2(100,100)Download
Average pLDDT?84.30
CAZy50 ID8925
CAZy50 RepYes, ABG60100.1
Structure ClusterSC_GH8_clus40
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID269798
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusCytophaga
SpeciesCytophaga hutchinsonii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNNIRSPSTV  FNKWNMILNP  TNRSSFMKKR  LLSAFIFVSL  VFTTVCHQTV  AQTQPFPANK60
TYSYGTMPGN  KNSQDAINNY  NTWKTNYVEA  CSNGRFRVKF  DNRSQTVSEG  IAYGMLLAAY120
SGDRTLFDGL  WNYYKDNRNG  NGVMNWKING  CSGTAGANGA  TDSEVDAAMA  LIVADYQWST180
SGSINYKNDA  KALITAIKNF  EVESGSYVLK  PGDQFGGSSL  TNPSYFAPGY  FRTFATYMND240
TFWNNVADKC  YVVINNNLSV  NNAAGGLVSD  WCTASGSYSS  AAGGYANGGR  NYSYDAARTP300
WRIAVDYVWY  GNASAKTYSK  KSSDFVRVNL  GGSQNVKDGY  SQNGSAVSNY  HNSTFVGAFA360
AAAMAGENQS  HLDNSYSDLK  GINDANSYFN  QTLKTLYLFL  LTGNFYLPGS  GTVVPPVNAA420
PTVSLTAPSN  NAAFNAPASV  TLTANAADAD  GTIAKVEFFN  GSTLLNTDAS  APYSFNWTNV480
AAGNYTITAK  ATDNAGAVTT  SAAVSITVTA  AANAAPTVSL  TAPSNNAAFN  VPASVTLTAN540
AADADGTIAK  VEFFNGSTLL  NTDASAPYSF  TWTGVAAGSY  TITAKATDNA  GAVTTSAAVS600
ITVTAAANAA  PTVSLTAPSN  NAAFTAPASV  TLTANAADAD  GTIAKVEFFN  GSTLLSTDAS660
APYSFNWTGV  AAGNYTITAK  ATDNTGAVTT  SAIVSITVTA  AANVAPTVSL  TAPSNNAAFT720
APASVTLTAN  AADADGTIAK  VEFFNGSTLL  STDASAPYSF  TWTNVAAGNY  TITAKATDNA780
GAVTTSATVS  ITVTAAANAA  PTVSLTAPTN  NAAFTAPASV  TLTANAADAD  GTIAKVEFFN840
GSTLLTGSVN  TSAPYTFTWT  GVAAGSYTIT  ARATDNTGAV  TTSAAVSITV  TAAPIENPGN900
DCITEAVPVA  AQWVVRNSWT  DQNMGSKAVS  TADALNIKHR  QWGNPELWAI  ETGKAISVVS960
GQSYTVSFDF  KNDAQTPVTS  LEIGFATAEA  WNGATLDQPA  VTVSGSIPAS  FTTKTVTITA1020
AATGTIYLAY  KLKLNGQPNN  EVNVFIKNIS  VCSSAAASSS  AARPAAPAAS  NEVNDLLMGA1080
NPFADQTTVE  IPYASTTSVH  LIMRDMNGLT  VWESYSLQTN  QKIYLGSGLP  IGTYLVTVSY1140
DGNSKTFRLL  KY1152

Predicted 3D structure by AlphaFold2 with pLDDT = 84.30 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNNIRSPSTV  FNKWNMILNP  TNRSSFMKKR  LLSAFIFVSL  VFTTVCHQTV  AQTQPFPANK60
TYSYGTMPGN  KNSQDAINNY  NTWKTNYVEA  CSNGRFRVKF  DNRSQTVSEG  IAYGMLLAAY120
SGDRTLFDGL  WNYYKDNRNG  NGVMNWKING  CSGTAGANGA  TDSEVDAAMA  LIVADYQWST180
SGSINYKNDA  KALITAIKNF  EVESGSYVLK  PGDQFGGSSL  TNPSYFAPGY  FRTFATYMND240
TFWNNVADKC  YVVINNNLSV  NNAAGGLVSD  WCTASGSYSS  AAGGYANGGR  NYSYDAARTP300
WRIAVDYVWY  GNASAKTYSK  KSSDFVRVNL  GGSQNVKDGY  SQNGSAVSNY  HNSTFVGAFA360
AAAMAGENQS  HLDNSYSDLK  GINDANSYFN  QTLKTLYLFL  LTGNFYLPGS  GTVVPPVNAA420
PTVSLTAPSN  NAAFNAPASV  TLTANAADAD  GTIAKVEFFN  GSTLLNTDAS  APYSFNWTNV480
AAGNYTITAK  ATDNAGAVTT  SAAVSITVTA  AANAAPTVSL  TAPSNNAAFN  VPASVTLTAN540
AADADGTIAK  VEFFNGSTLL  NTDASAPYSF  TWTGVAAGSY  TITAKATDNA  GAVTTSAAVS600
ITVTAAANAA  PTVSLTAPSN  NAAFTAPASV  TLTANAADAD  GTIAKVEFFN  GSTLLSTDAS660
APYSFNWTGV  AAGNYTITAK  ATDNTGAVTT  SAIVSITVTA  AANVAPTVSL  TAPSNNAAFT720
APASVTLTAN  AADADGTIAK  VEFFNGSTLL  STDASAPYSF  TWTNVAAGNY  TITAKATDNA780
GAVTTSATVS  ITVTAAANAA  PTVSLTAPTN  NAAFTAPASV  TLTANAADAD  GTIAKVEFFN840
GSTLLTGSVN  TSAPYTFTWT  GVAAGSYTIT  ARATDNTGAV  TTSAAVSITV  TAAPIENPGN900
DCITEAVPVA  AQWVVRNSWT  DQNMGSKAVS  TADALNIKHR  QWGNPELWAI  ETGKAISVVS960
GQSYTVSFDF  KNDAQTPVTS  LEIGFATAEA  WNGATLDQPA  VTVSGSIPAS  FTTKTVTITA1020
AATGTIYLAY  KLKLNGQPNN  EVNVFIKNIS  VCSSAAASSS  AARPAAPAAS  NEVNDLLMGA1080
NPFADQTTVE  IPYASTTSVH  LIMRDMNGLT  VWESYSLQTN  QKIYLGSGLP  IGTYLVTVSY1140
DGNSKTFRLL  KY1152

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(79-399)

MNNIRSPSTV  FNKWNMILNP  TNRSSFMKKR  LLSAFIFVSL  VFTTVCHQTV  AQTQPFPANK60
TYSYGTMPGN  KNSQDAINNY  NTWKTNYVEA  CSNGRFRVKF  DNRSQTVSEG  IAYGMLLAAY120
SGDRTLFDGL  WNYYKDNRNG  NGVMNWKING  CSGTAGANGA  TDSEVDAAMA  LIVADYQWST180
SGSINYKNDA  KALITAIKNF  EVESGSYVLK  PGDQFGGSSL  TNPSYFAPGY  FRTFATYMND240
TFWNNVADKC  YVVINNNLSV  NNAAGGLVSD  WCTASGSYSS  AAGGYANGGR  NYSYDAARTP300
WRIAVDYVWY  GNASAKTYSK  KSSDFVRVNL  GGSQNVKDGY  SQNGSAVSNY  HNSTFVGAFA360
AAAMAGENQS  HLDNSYSDLK  GINDANSYFN  QTLKTLYLFL  LTGNFYLPGS  GTVVPPVNAA420
PTVSLTAPSN  NAAFNAPASV  TLTANAADAD  GTIAKVEFFN  GSTLLNTDAS  APYSFNWTNV480
AAGNYTITAK  ATDNAGAVTT  SAAVSITVTA  AANAAPTVSL  TAPSNNAAFN  VPASVTLTAN540
AADADGTIAK  VEFFNGSTLL  NTDASAPYSF  TWTGVAAGSY  TITAKATDNA  GAVTTSAAVS600
ITVTAAANAA  PTVSLTAPSN  NAAFTAPASV  TLTANAADAD  GTIAKVEFFN  GSTLLSTDAS660
APYSFNWTGV  AAGNYTITAK  ATDNTGAVTT  SAIVSITVTA  AANVAPTVSL  TAPSNNAAFT720
APASVTLTAN  AADADGTIAK  VEFFNGSTLL  STDASAPYSF  TWTNVAAGNY  TITAKATDNA780
GAVTTSATVS  ITVTAAANAA  PTVSLTAPTN  NAAFTAPASV  TLTANAADAD  GTIAKVEFFN840
GSTLLTGSVN  TSAPYTFTWT  GVAAGSYTIT  ARATDNTGAV  TTSAAVSITV  TAAPIENPGN900
DCITEAVPVA  AQWVVRNSWT  DQNMGSKAVS  TADALNIKHR  QWGNPELWAI  ETGKAISVVS960
GQSYTVSFDF  KNDAQTPVTS  LEIGFATAEA  WNGATLDQPA  VTVSGSIPAS  FTTKTVTITA1020
AATGTIYLAY  KLKLNGQPNN  EVNVFIKNIS  VCSSAAASSS  AARPAAPAAS  NEVNDLLMGA1080
NPFADQTTVE  IPYASTTSVH  LIMRDMNGLT  VWESYSLQTN  QKIYLGSGLP  IGTYLVTVSY1140
DGNSKTFRLL  KY1152

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help