Information for CAZyme ID: ABG60100.1
Basic Information
GenBank ID | ABG60100.1 |
Family | GH8 |
Sequence Length | 1152 |
UniProt ID | A0A6N4SUL2(100,100)![]() |
Average pLDDT? | 84.30 |
CAZy50 ID | 8925 |
CAZy50 Rep | Yes, ABG60100.1 |
Structure Cluster | SC_GH8_clus40 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 269798 |
Kingdom | Bacteria |
Phylum | Bacteroidota |
Class | Cytophagia |
Order | Cytophagales |
Family | Cytophagaceae |
Genus | Cytophaga |
Species | Cytophaga hutchinsonii |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MNNIRSPSTV FNKWNMILNP TNRSSFMKKR LLSAFIFVSL VFTTVCHQTV AQTQPFPANK | 60 |
TYSYGTMPGN KNSQDAINNY NTWKTNYVEA CSNGRFRVKF DNRSQTVSEG IAYGMLLAAY | 120 |
SGDRTLFDGL WNYYKDNRNG NGVMNWKING CSGTAGANGA TDSEVDAAMA LIVADYQWST | 180 |
SGSINYKNDA KALITAIKNF EVESGSYVLK PGDQFGGSSL TNPSYFAPGY FRTFATYMND | 240 |
TFWNNVADKC YVVINNNLSV NNAAGGLVSD WCTASGSYSS AAGGYANGGR NYSYDAARTP | 300 |
WRIAVDYVWY GNASAKTYSK KSSDFVRVNL GGSQNVKDGY SQNGSAVSNY HNSTFVGAFA | 360 |
AAAMAGENQS HLDNSYSDLK GINDANSYFN QTLKTLYLFL LTGNFYLPGS GTVVPPVNAA | 420 |
PTVSLTAPSN NAAFNAPASV TLTANAADAD GTIAKVEFFN GSTLLNTDAS APYSFNWTNV | 480 |
AAGNYTITAK ATDNAGAVTT SAAVSITVTA AANAAPTVSL TAPSNNAAFN VPASVTLTAN | 540 |
AADADGTIAK VEFFNGSTLL NTDASAPYSF TWTGVAAGSY TITAKATDNA GAVTTSAAVS | 600 |
ITVTAAANAA PTVSLTAPSN NAAFTAPASV TLTANAADAD GTIAKVEFFN GSTLLSTDAS | 660 |
APYSFNWTGV AAGNYTITAK ATDNTGAVTT SAIVSITVTA AANVAPTVSL TAPSNNAAFT | 720 |
APASVTLTAN AADADGTIAK VEFFNGSTLL STDASAPYSF TWTNVAAGNY TITAKATDNA | 780 |
GAVTTSATVS ITVTAAANAA PTVSLTAPTN NAAFTAPASV TLTANAADAD GTIAKVEFFN | 840 |
GSTLLTGSVN TSAPYTFTWT GVAAGSYTIT ARATDNTGAV TTSAAVSITV TAAPIENPGN | 900 |
DCITEAVPVA AQWVVRNSWT DQNMGSKAVS TADALNIKHR QWGNPELWAI ETGKAISVVS | 960 |
GQSYTVSFDF KNDAQTPVTS LEIGFATAEA WNGATLDQPA VTVSGSIPAS FTTKTVTITA | 1020 |
AATGTIYLAY KLKLNGQPNN EVNVFIKNIS VCSSAAASSS AARPAAPAAS NEVNDLLMGA | 1080 |
NPFADQTTVE IPYASTTSVH LIMRDMNGLT VWESYSLQTN QKIYLGSGLP IGTYLVTVSY | 1140 |
DGNSKTFRLL KY | 1152 |
Predicted 3D structure by AlphaFold2 with pLDDT = 84.30 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MNNIRSPSTV FNKWNMILNP TNRSSFMKKR LLSAFIFVSL VFTTVCHQTV AQTQPFPANK | 60 |
TYSYGTMPGN KNSQDAINNY NTWKTNYVEA CSNGRFRVKF DNRSQTVSEG IAYGMLLAAY | 120 |
SGDRTLFDGL WNYYKDNRNG NGVMNWKING CSGTAGANGA TDSEVDAAMA LIVADYQWST | 180 |
SGSINYKNDA KALITAIKNF EVESGSYVLK PGDQFGGSSL TNPSYFAPGY FRTFATYMND | 240 |
TFWNNVADKC YVVINNNLSV NNAAGGLVSD WCTASGSYSS AAGGYANGGR NYSYDAARTP | 300 |
WRIAVDYVWY GNASAKTYSK KSSDFVRVNL GGSQNVKDGY SQNGSAVSNY HNSTFVGAFA | 360 |
AAAMAGENQS HLDNSYSDLK GINDANSYFN QTLKTLYLFL LTGNFYLPGS GTVVPPVNAA | 420 |
PTVSLTAPSN NAAFNAPASV TLTANAADAD GTIAKVEFFN GSTLLNTDAS APYSFNWTNV | 480 |
AAGNYTITAK ATDNAGAVTT SAAVSITVTA AANAAPTVSL TAPSNNAAFN VPASVTLTAN | 540 |
AADADGTIAK VEFFNGSTLL NTDASAPYSF TWTGVAAGSY TITAKATDNA GAVTTSAAVS | 600 |
ITVTAAANAA PTVSLTAPSN NAAFTAPASV TLTANAADAD GTIAKVEFFN GSTLLSTDAS | 660 |
APYSFNWTGV AAGNYTITAK ATDNTGAVTT SAIVSITVTA AANVAPTVSL TAPSNNAAFT | 720 |
APASVTLTAN AADADGTIAK VEFFNGSTLL STDASAPYSF TWTNVAAGNY TITAKATDNA | 780 |
GAVTTSATVS ITVTAAANAA PTVSLTAPTN NAAFTAPASV TLTANAADAD GTIAKVEFFN | 840 |
GSTLLTGSVN TSAPYTFTWT GVAAGSYTIT ARATDNTGAV TTSAAVSITV TAAPIENPGN | 900 |
DCITEAVPVA AQWVVRNSWT DQNMGSKAVS TADALNIKHR QWGNPELWAI ETGKAISVVS | 960 |
GQSYTVSFDF KNDAQTPVTS LEIGFATAEA WNGATLDQPA VTVSGSIPAS FTTKTVTITA | 1020 |
AATGTIYLAY KLKLNGQPNN EVNVFIKNIS VCSSAAASSS AARPAAPAAS NEVNDLLMGA | 1080 |
NPFADQTTVE IPYASTTSVH LIMRDMNGLT VWESYSLQTN QKIYLGSGLP IGTYLVTVSY | 1140 |
DGNSKTFRLL KY | 1152 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.