CAZyme3D

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Entry ID

Information for CAZyme ID: ABE30435.1

Basic Information

GenBank IDABE30435.1
FamilyGT4
Sequence Length468
UniProt IDQ13ZQ4(100,100)Download
Average pLDDT?80.77
CAZy50 ID75911
CAZy50 RepYes, ABE30435.1
Structure ClusterSC_GT4_clus397
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID266265
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia xenovorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MWRIVGCACA  CPHSTRDCTR  IIRYRHSPIA  NLRLPLLRLP  MRPTIEASPL  APLTHSLQRV60
QPALIDPPAA  AAPSASAATA  AALAIPRVLF  VDQSGQLGGA  EFALLQLAGH  CAARSEVVLL120
SDGPFRARLE  TLGVRVQVIN  DARVSNVERQ  ASVLNCLRVV  PGILRQVRAI  ATRARRFDVL180
FLNTQKALVL  GALGKPLHRK  PVIWYQHDIL  TREHFGRVQL  SVVKWLVRFA  VDHVVVNSQA240
SERSLAALTG  NAAGSAPVVY  NGIDAAAFSR  VNGSDMAALR  RRLGLPETAW  LAGLFGRLAP300
WKGQHIALDA  LARLADAHLV  LVGAPLFGED  AYAQRLREQA  ATLGVTDRVH  FAGFQDDVPA360
WMKAMDVILH  TSTEPEPFGR  VVVEGMAAAR  PVIASAAGGV  TEIVRHGHNG  WLVKPGDAAA420
LAEAIGTLRA  DPALAQRLAK  QALADAQTEF  SVEQYLQRMT  QEIRQAAR468

Predicted 3D structure by AlphaFold2 with pLDDT = 80.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MWRIVGCACA  CPHSTRDCTR  IIRYRHSPIA  NLRLPLLRLP  MRPTIEASPL  APLTHSLQRV60
QPALIDPPAA  AAPSASAATA  AALAIPRVLF  VDQSGQLGGA  EFALLQLAGH  CAARSEVVLL120
SDGPFRARLE  TLGVRVQVIN  DARVSNVERQ  ASVLNCLRVV  PGILRQVRAI  ATRARRFDVL180
FLNTQKALVL  GALGKPLHRK  PVIWYQHDIL  TREHFGRVQL  SVVKWLVRFA  VDHVVVNSQA240
SERSLAALTG  NAAGSAPVVY  NGIDAAAFSR  VNGSDMAALR  RRLGLPETAW  LAGLFGRLAP300
WKGQHIALDA  LARLADAHLV  LVGAPLFGED  AYAQRLREQA  ATLGVTDRVH  FAGFQDDVPA360
WMKAMDVILH  TSTEPEPFGR  VVVEGMAAAR  PVIASAAGGV  TEIVRHGHNG  WLVKPGDAAA420
LAEAIGTLRA  DPALAQRLAK  QALADAQTEF  SVEQYLQRMT  QEIRQAAR468

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(294-439)

MWRIVGCACA  CPHSTRDCTR  IIRYRHSPIA  NLRLPLLRLP  MRPTIEASPL  APLTHSLQRV60
QPALIDPPAA  AAPSASAATA  AALAIPRVLF  VDQSGQLGGA  EFALLQLAGH  CAARSEVVLL120
SDGPFRARLE  TLGVRVQVIN  DARVSNVERQ  ASVLNCLRVV  PGILRQVRAI  ATRARRFDVL180
FLNTQKALVL  GALGKPLHRK  PVIWYQHDIL  TREHFGRVQL  SVVKWLVRFA  VDHVVVNSQA240
SERSLAALTG  NAAGSAPVVY  NGIDAAAFSR  VNGSDMAALR  RRLGLPETAW  LAGLFGRLAP300
WKGQHIALDA  LARLADAHLV  LVGAPLFGED  AYAQRLREQA  ATLGVTDRVH  FAGFQDDVPA360
WMKAMDVILH  TSTEPEPFGR  VVVEGMAAAR  PVIASAAGGV  TEIVRHGHNG  WLVKPGDAAA420
LAEAIGTLRA  DPALAQRLAK  QALADAQTEF  SVEQYLQRMT  QEIRQAAR468

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help