Information for CAZyme ID: ABD01653.1
Basic Information
GenBank ID | ABD01653.1 |
Family | GH3 |
Sequence Length | 611 |
UniProt ID | Q2JNK6(100,100)![]() |
Average pLDDT? | 74.92 |
CAZy50 ID | 50838 |
CAZy50 Rep | Yes, ABD01653.1 |
Structure Cluster | SC_GH3_clus224 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 321332 |
Kingdom | Bacteria |
Phylum | Cyanobacteriota |
Class | Cyanophyceae |
Order | Synechococcales |
Family | Synechococcaceae |
Genus | Synechococcus |
Species | Synechococcus sp. JA-2-3B'a(2-13) |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MSLARQVAQL LVVPVSARLG SQSPPREILK RLIQEVGIGG IWLTDGHVAE ALLLIEEAQS | 60 |
WAALPLLVAA EVGRGLALQG ATPFPHPLGL SRLGAEAERW AEQWGRITAR EAAAIGINWL | 120 |
LNPVAEPLGE LALAEDPLSA LQLARAFVRG CEQAVPEGIL TTASSFPGKG GFKSVQAGAE | 180 |
RVPAALAGRR PKAADIPWCP RLSLTPAQLQ EGPWLPFRGL VEQVGAILVS HVVLPEWDER | 240 |
WPITLLPGRL TQLLRQEWGF GGLIVVDSLD QGFLAELAVR VSGTESFPNS LAVRAFQAGA | 300 |
DLILAPPDPT ASLAAVLEAV QQGSLSAAQL AQSVTRVLRA KQRLLPAASA LLQQVWPALA | 360 |
ETDFSALGGW MGAKDPTDPA LNRGSPAEQL KPLLLGDPIS KDKDSVPRTR TALGKLFNRR | 420 |
SHLTSALHRA AQLGSLLAEK DIAPCQAAMA RGGVEGGRPL SPPAEPGWLN WIWQDPPLGA | 480 |
ADVQLQSPAL HVPAALGMLP VLSDALTPLP WLEAALNNAP GFIFQGFLRD PLPNYVLDWL | 540 |
QQHRERVAAV VIYGNLSLYR RLQAHFPWAN AIHSLNRDPW AQAEVMGRLF PNRSPSEGSK | 600 |
SHVAQPTIKK K | 611 |
Predicted 3D structure by AlphaFold2 with pLDDT = 74.92 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MSLARQVAQL LVVPVSARLG SQSPPREILK RLIQEVGIGG IWLTDGHVAE ALLLIEEAQS | 60 |
WAALPLLVAA EVGRGLALQG ATPFPHPLGL SRLGAEAERW AEQWGRITAR EAAAIGINWL | 120 |
LNPVAEPLGE LALAEDPLSA LQLARAFVRG CEQAVPEGIL TTASSFPGKG GFKSVQAGAE | 180 |
RVPAALAGRR PKAADIPWCP RLSLTPAQLQ EGPWLPFRGL VEQVGAILVS HVVLPEWDER | 240 |
WPITLLPGRL TQLLRQEWGF GGLIVVDSLD QGFLAELAVR VSGTESFPNS LAVRAFQAGA | 300 |
DLILAPPDPT ASLAAVLEAV QQGSLSAAQL AQSVTRVLRA KQRLLPAASA LLQQVWPALA | 360 |
ETDFSALGGW MGAKDPTDPA LNRGSPAEQL KPLLLGDPIS KDKDSVPRTR TALGKLFNRR | 420 |
SHLTSALHRA AQLGSLLAEK DIAPCQAAMA RGGVEGGRPL SPPAEPGWLN WIWQDPPLGA | 480 |
ADVQLQSPAL HVPAALGMLP VLSDALTPLP WLEAALNNAP GFIFQGFLRD PLPNYVLDWL | 540 |
QQHRERVAAV VIYGNLSLYR RLQAHFPWAN AIHSLNRDPW AQAEVMGRLF PNRSPSEGSK | 600 |
SHVAQPTIKK K | 611 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.