CAZyme3D

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Entry ID

Information for CAZyme ID: ABD01653.1

Basic Information

GenBank IDABD01653.1
FamilyGH3
Sequence Length611
UniProt IDQ2JNK6(100,100)Download
Average pLDDT?74.92
CAZy50 ID50838
CAZy50 RepYes, ABD01653.1
Structure ClusterSC_GH3_clus224
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID321332
KingdomBacteria
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus sp. JA-2-3B'a(2-13)

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSLARQVAQL  LVVPVSARLG  SQSPPREILK  RLIQEVGIGG  IWLTDGHVAE  ALLLIEEAQS60
WAALPLLVAA  EVGRGLALQG  ATPFPHPLGL  SRLGAEAERW  AEQWGRITAR  EAAAIGINWL120
LNPVAEPLGE  LALAEDPLSA  LQLARAFVRG  CEQAVPEGIL  TTASSFPGKG  GFKSVQAGAE180
RVPAALAGRR  PKAADIPWCP  RLSLTPAQLQ  EGPWLPFRGL  VEQVGAILVS  HVVLPEWDER240
WPITLLPGRL  TQLLRQEWGF  GGLIVVDSLD  QGFLAELAVR  VSGTESFPNS  LAVRAFQAGA300
DLILAPPDPT  ASLAAVLEAV  QQGSLSAAQL  AQSVTRVLRA  KQRLLPAASA  LLQQVWPALA360
ETDFSALGGW  MGAKDPTDPA  LNRGSPAEQL  KPLLLGDPIS  KDKDSVPRTR  TALGKLFNRR420
SHLTSALHRA  AQLGSLLAEK  DIAPCQAAMA  RGGVEGGRPL  SPPAEPGWLN  WIWQDPPLGA480
ADVQLQSPAL  HVPAALGMLP  VLSDALTPLP  WLEAALNNAP  GFIFQGFLRD  PLPNYVLDWL540
QQHRERVAAV  VIYGNLSLYR  RLQAHFPWAN  AIHSLNRDPW  AQAEVMGRLF  PNRSPSEGSK600
SHVAQPTIKK  K611

Predicted 3D structure by AlphaFold2 with pLDDT = 74.92 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSLARQVAQL  LVVPVSARLG  SQSPPREILK  RLIQEVGIGG  IWLTDGHVAE  ALLLIEEAQS60
WAALPLLVAA  EVGRGLALQG  ATPFPHPLGL  SRLGAEAERW  AEQWGRITAR  EAAAIGINWL120
LNPVAEPLGE  LALAEDPLSA  LQLARAFVRG  CEQAVPEGIL  TTASSFPGKG  GFKSVQAGAE180
RVPAALAGRR  PKAADIPWCP  RLSLTPAQLQ  EGPWLPFRGL  VEQVGAILVS  HVVLPEWDER240
WPITLLPGRL  TQLLRQEWGF  GGLIVVDSLD  QGFLAELAVR  VSGTESFPNS  LAVRAFQAGA300
DLILAPPDPT  ASLAAVLEAV  QQGSLSAAQL  AQSVTRVLRA  KQRLLPAASA  LLQQVWPALA360
ETDFSALGGW  MGAKDPTDPA  LNRGSPAEQL  KPLLLGDPIS  KDKDSVPRTR  TALGKLFNRR420
SHLTSALHRA  AQLGSLLAEK  DIAPCQAAMA  RGGVEGGRPL  SPPAEPGWLN  WIWQDPPLGA480
ADVQLQSPAL  HVPAALGMLP  VLSDALTPLP  WLEAALNNAP  GFIFQGFLRD  PLPNYVLDWL540
QQHRERVAAV  VIYGNLSLYR  RLQAHFPWAN  AIHSLNRDPW  AQAEVMGRLF  PNRSPSEGSK600
SHVAQPTIKK  K611

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(58-304)

MSLARQVAQL  LVVPVSARLG  SQSPPREILK  RLIQEVGIGG  IWLTDGHVAE  ALLLIEEAQS60
WAALPLLVAA  EVGRGLALQG  ATPFPHPLGL  SRLGAEAERW  AEQWGRITAR  EAAAIGINWL120
LNPVAEPLGE  LALAEDPLSA  LQLARAFVRG  CEQAVPEGIL  TTASSFPGKG  GFKSVQAGAE180
RVPAALAGRR  PKAADIPWCP  RLSLTPAQLQ  EGPWLPFRGL  VEQVGAILVS  HVVLPEWDER240
WPITLLPGRL  TQLLRQEWGF  GGLIVVDSLD  QGFLAELAVR  VSGTESFPNS  LAVRAFQAGA300
DLILAPPDPT  ASLAAVLEAV  QQGSLSAAQL  AQSVTRVLRA  KQRLLPAASA  LLQQVWPALA360
ETDFSALGGW  MGAKDPTDPA  LNRGSPAEQL  KPLLLGDPIS  KDKDSVPRTR  TALGKLFNRR420
SHLTSALHRA  AQLGSLLAEK  DIAPCQAAMA  RGGVEGGRPL  SPPAEPGWLN  WIWQDPPLGA480
ADVQLQSPAL  HVPAALGMLP  VLSDALTPLP  WLEAALNNAP  GFIFQGFLRD  PLPNYVLDWL540
QQHRERVAAV  VIYGNLSLYR  RLQAHFPWAN  AIHSLNRDPW  AQAEVMGRLF  PNRSPSEGSK600
SHVAQPTIKK  K611

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help