Information for CAZyme ID: ABB24850.1
Basic Information
GenBank ID | ABB24850.1 |
Family | GH171 |
Sequence Length | 388 |
UniProt ID | Q3B1D1(100,100)![]() |
Average pLDDT? | 97.00 |
CAZy50 ID | 105990 |
CAZy50 Rep | Yes, ABB24850.1 |
Structure Cluster | SC_GH171_clus4 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 319225 |
Kingdom | Bacteria |
Phylum | Chlorobiota |
Class | Chlorobiia |
Order | Chlorobiales |
Family | Chlorobiaceae |
Genus | Pelodictyon |
Species | Pelodictyon luteolum |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MILTGLDRLL AEPDGISGRS IGLLVNQTSL TREFEYSWNA LNRRGIPVRR LFSPEHGLFA | 60 |
IEQDQVAVGF EPETGCETAS LYGSTADSLI PKKELLPDLD LIIFDIQDVG SRYYTYLNTL | 120 |
ALLMEAVSGM GIEIMVLDRP NPLGGTAVEG PMLDPAFRSF VGIFPVPVRH GLTAGELAHL | 180 |
YRDYRKLDLE LSVVPMEGWR RDMLFGDTGL QWVPPSPNMP TVQTAAVYPG MCLFEGLSVS | 240 |
EGRGTTTPFE LSGAPFVHPE ALAEACRSYN LPGIVFRPAW FRPGFHKFAG EAVGGIALQV | 300 |
SDLRSFRPFA TGVAMTAALH RLYPGDVRFL RGVYEFNDTV PAFDLLAGNA SVRTSIEEDL | 360 |
PVEAIIDSWR ADEAAFSAEK QAFHIYGH | 388 |
Predicted 3D structure by AlphaFold2 with pLDDT = 97.00 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MILTGLDRLL AEPDGISGRS IGLLVNQTSL TREFEYSWNA LNRRGIPVRR LFSPEHGLFA | 60 |
IEQDQVAVGF EPETGCETAS LYGSTADSLI PKKELLPDLD LIIFDIQDVG SRYYTYLNTL | 120 |
ALLMEAVSGM GIEIMVLDRP NPLGGTAVEG PMLDPAFRSF VGIFPVPVRH GLTAGELAHL | 180 |
YRDYRKLDLE LSVVPMEGWR RDMLFGDTGL QWVPPSPNMP TVQTAAVYPG MCLFEGLSVS | 240 |
EGRGTTTPFE LSGAPFVHPE ALAEACRSYN LPGIVFRPAW FRPGFHKFAG EAVGGIALQV | 300 |
SDLRSFRPFA TGVAMTAALH RLYPGDVRFL RGVYEFNDTV PAFDLLAGNA SVRTSIEEDL | 360 |
PVEAIIDSWR ADEAAFSAEK QAFHIYGH | 388 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.