CAZyme3D

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Entry ID

Information for CAZyme ID: ABB24850.1

Basic Information

GenBank IDABB24850.1
FamilyGH171
Sequence Length388
UniProt IDQ3B1D1(100,100)Download
Average pLDDT?97.00
CAZy50 ID105990
CAZy50 RepYes, ABB24850.1
Structure ClusterSC_GH171_clus4
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID319225
KingdomBacteria
PhylumChlorobiota
ClassChlorobiia
OrderChlorobiales
FamilyChlorobiaceae
GenusPelodictyon
SpeciesPelodictyon luteolum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MILTGLDRLL  AEPDGISGRS  IGLLVNQTSL  TREFEYSWNA  LNRRGIPVRR  LFSPEHGLFA60
IEQDQVAVGF  EPETGCETAS  LYGSTADSLI  PKKELLPDLD  LIIFDIQDVG  SRYYTYLNTL120
ALLMEAVSGM  GIEIMVLDRP  NPLGGTAVEG  PMLDPAFRSF  VGIFPVPVRH  GLTAGELAHL180
YRDYRKLDLE  LSVVPMEGWR  RDMLFGDTGL  QWVPPSPNMP  TVQTAAVYPG  MCLFEGLSVS240
EGRGTTTPFE  LSGAPFVHPE  ALAEACRSYN  LPGIVFRPAW  FRPGFHKFAG  EAVGGIALQV300
SDLRSFRPFA  TGVAMTAALH  RLYPGDVRFL  RGVYEFNDTV  PAFDLLAGNA  SVRTSIEEDL360
PVEAIIDSWR  ADEAAFSAEK  QAFHIYGH388

Predicted 3D structure by AlphaFold2 with pLDDT = 97.00 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MILTGLDRLL  AEPDGISGRS  IGLLVNQTSL  TREFEYSWNA  LNRRGIPVRR  LFSPEHGLFA60
IEQDQVAVGF  EPETGCETAS  LYGSTADSLI  PKKELLPDLD  LIIFDIQDVG  SRYYTYLNTL120
ALLMEAVSGM  GIEIMVLDRP  NPLGGTAVEG  PMLDPAFRSF  VGIFPVPVRH  GLTAGELAHL180
YRDYRKLDLE  LSVVPMEGWR  RDMLFGDTGL  QWVPPSPNMP  TVQTAAVYPG  MCLFEGLSVS240
EGRGTTTPFE  LSGAPFVHPE  ALAEACRSYN  LPGIVFRPAW  FRPGFHKFAG  EAVGGIALQV300
SDLRSFRPFA  TGVAMTAALH  RLYPGDVRFL  RGVYEFNDTV  PAFDLLAGNA  SVRTSIEEDL360
PVEAIIDSWR  ADEAAFSAEK  QAFHIYGH388

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(21-386)

MILTGLDRLL  AEPDGISGRS  IGLLVNQTSL  TREFEYSWNA  LNRRGIPVRR  LFSPEHGLFA60
IEQDQVAVGF  EPETGCETAS  LYGSTADSLI  PKKELLPDLD  LIIFDIQDVG  SRYYTYLNTL120
ALLMEAVSGM  GIEIMVLDRP  NPLGGTAVEG  PMLDPAFRSF  VGIFPVPVRH  GLTAGELAHL180
YRDYRKLDLE  LSVVPMEGWR  RDMLFGDTGL  QWVPPSPNMP  TVQTAAVYPG  MCLFEGLSVS240
EGRGTTTPFE  LSGAPFVHPE  ALAEACRSYN  LPGIVFRPAW  FRPGFHKFAG  EAVGGIALQV300
SDLRSFRPFA  TGVAMTAALH  RLYPGDVRFL  RGVYEFNDTV  PAFDLLAGNA  SVRTSIEEDL360
PVEAIIDSWR  ADEAAFSAEK  QAFHIYGH388

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help