CAZyme3D

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Entry ID

Information for CAZyme ID: ABA49091.1

Basic Information

GenBank IDABA49091.1
FamilyGT51
Sequence Length616
UniProt IDQ3JNJ0(100,100)Download
Average pLDDT?57.42
CAZy50 ID50073
CAZy50 RepYes, ABA49091.1
Structure ClusterSC_GT51_clus110
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID320372
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia pseudomallei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRWCRAASR  PTKTRTPTRP  TRRCSTPPTN  RRKAKRKRSP  RRAARRAATA  NRPRTARNNR60
NEHGRRIGSA  RARSLCGDRQ  SDRAQQIAVH  PFAFRRADGR  GDRIHASARA  ARRLFGHGAR120
VHRAGRPRRE  RHGAVQARGL  CARRCAVAAR  GGGGRGQHAA  LRRGRRFRRQ  HRRRRPRARH180
RGESRREPHG  RADPAARRGR  RGTRRRAADA  RARARVAHDR  QPDREQGGRT  RRPVHAGGAR240
RGLRARRRRA  RTDRARAVRR  DRQRDGGQPR  RGAARVRRGG  LRPGDARVRH  DVRRAPDRVH300
GARRGARRAH  GGWPRNARRA  GRGIVPRLAR  RATRQRARAR  RAARRARGVG  RALSAGGARG360
MRNSPVSPGP  GYAPARGSER  ARRRGVARWL  AYVGGVFAGA  WLATQLYYAV  QIAMWSVFDP420
GSSAFMRADA  WRLSNAQPAT  TIRHRWVPYD  QIARTLKRAV  IASEDADFAN  NSGYEVDAIL480
QAWEKNRARG  RIVSGGSTIT  QQLARNLFLS  GERSYIRKGQ  ELIITWMLET  LLDKERIFEI540
YLNSVEFGRG  VYGAQAAAQY  YYRIPASRLS  AWQSARLAVM  LPNPKYFDAH  RGSPYLAQRA600
GVIARRMGAA  ELPASQ616

Predicted 3D structure by AlphaFold2 with pLDDT = 57.42 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRRWCRAASR  PTKTRTPTRP  TRRCSTPPTN  RRKAKRKRSP  RRAARRAATA  NRPRTARNNR60
NEHGRRIGSA  RARSLCGDRQ  SDRAQQIAVH  PFAFRRADGR  GDRIHASARA  ARRLFGHGAR120
VHRAGRPRRE  RHGAVQARGL  CARRCAVAAR  GGGGRGQHAA  LRRGRRFRRQ  HRRRRPRARH180
RGESRREPHG  RADPAARRGR  RGTRRRAADA  RARARVAHDR  QPDREQGGRT  RRPVHAGGAR240
RGLRARRRRA  RTDRARAVRR  DRQRDGGQPR  RGAARVRRGG  LRPGDARVRH  DVRRAPDRVH300
GARRGARRAH  GGWPRNARRA  GRGIVPRLAR  RATRQRARAR  RAARRARGVG  RALSAGGARG360
MRNSPVSPGP  GYAPARGSER  ARRRGVARWL  AYVGGVFAGA  WLATQLYYAV  QIAMWSVFDP420
GSSAFMRADA  WRLSNAQPAT  TIRHRWVPYD  QIARTLKRAV  IASEDADFAN  NSGYEVDAIL480
QAWEKNRARG  RIVSGGSTIT  QQLARNLFLS  GERSYIRKGQ  ELIITWMLET  LLDKERIFEI540
YLNSVEFGRG  VYGAQAAAQY  YYRIPASRLS  AWQSARLAVM  LPNPKYFDAH  RGSPYLAQRA600
GVIARRMGAA  ELPASQ616

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(442-607)

MRRWCRAASR  PTKTRTPTRP  TRRCSTPPTN  RRKAKRKRSP  RRAARRAATA  NRPRTARNNR60
NEHGRRIGSA  RARSLCGDRQ  SDRAQQIAVH  PFAFRRADGR  GDRIHASARA  ARRLFGHGAR120
VHRAGRPRRE  RHGAVQARGL  CARRCAVAAR  GGGGRGQHAA  LRRGRRFRRQ  HRRRRPRARH180
RGESRREPHG  RADPAARRGR  RGTRRRAADA  RARARVAHDR  QPDREQGGRT  RRPVHAGGAR240
RGLRARRRRA  RTDRARAVRR  DRQRDGGQPR  RGAARVRRGG  LRPGDARVRH  DVRRAPDRVH300
GARRGARRAH  GGWPRNARRA  GRGIVPRLAR  RATRQRARAR  RAARRARGVG  RALSAGGARG360
MRNSPVSPGP  GYAPARGSER  ARRRGVARWL  AYVGGVFAGA  WLATQLYYAV  QIAMWSVFDP420
GSSAFMRADA  WRLSNAQPAT  TIRHRWVPYD  QIARTLKRAV  IASEDADFAN  NSGYEVDAIL480
QAWEKNRARG  RIVSGGSTIT  QQLARNLFLS  GERSYIRKGQ  ELIITWMLET  LLDKERIFEI540
YLNSVEFGRG  VYGAQAAAQY  YYRIPASRLS  AWQSARLAVM  LPNPKYFDAH  RGSPYLAQRA600
GVIARRMGAA  ELPASQ616

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help