CAZyme3D

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Entry ID

Information for CAZyme ID: AAU21486.1

Basic Information

GenBank IDAAU21486.1
FamilyCBM47
Sequence Length227
UniProt IDQ645Q0(100,100)Download
Average pLDDT?86.90
CAZy50 ID176536
CAZy50 RepYes, AAU21486.1
Structure ClusterSC_CBM47_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID8078
KingdomEukaryota
PhylumChordata
ClassActinopteri
OrderCyprinodontiformes
FamilyFundulidae
GenusFundulus
SpeciesFundulus heteroclitus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

KALSPVIPEN  LSSKKSGIVR  QVVLFHLLPF  FAMYSAQNYP  NVALRGKATQ  AQRYKGDWDV60
FGAASNAIDG  NTNPNFKDGS  CSHTASQTNP  WWRVDLLDSY  TITHIIITNR  GDCCHDRING120
ATIHIGNSLT  LNGAANPSVA  AISEIPSATS  HRIDISDPKE  GRYVTIMIPG  SDKILTLCEV180
EVYGYRTPTG  ENLSLQGKAT  QSSLFEFGFA  YNAIDGNRNN  EWSKAPC227

Predicted 3D structure by AlphaFold2 with pLDDT = 86.90 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

KALSPVIPEN  LSSKKSGIVR  QVVLFHLLPF  FAMYSAQNYP  NVALRGKATQ  AQRYKGDWDV60
FGAASNAIDG  NTNPNFKDGS  CSHTASQTNP  WWRVDLLDSY  TITHIIITNR  GDCCHDRING120
ATIHIGNSLT  LNGAANPSVA  AISEIPSATS  HRIDISDPKE  GRYVTIMIPG  SDKILTLCEV180
EVYGYRTPTG  ENLSLQGKAT  QSSLFEFGFA  YNAIDGNRNN  EWSKAPC227

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM47(50-180)

KALSPVIPEN  LSSKKSGIVR  QVVLFHLLPF  FAMYSAQNYP  NVALRGKATQ  AQRYKGDWDV60
FGAASNAIDG  NTNPNFKDGS  CSHTASQTNP  WWRVDLLDSY  TITHIIITNR  GDCCHDRING120
ATIHIGNSLT  LNGAANPSVA  AISEIPSATS  HRIDISDPKE  GRYVTIMIPG  SDKILTLCEV180
EVYGYRTPTG  ENLSLQGKAT  QSSLFEFGFA  YNAIDGNRNN  EWSKAPC227

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help