CAZyme3D

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Entry ID

Information for CAZyme ID: AAT42702.1

Basic Information

GenBank IDAAT42702.1
FamilyGT2
Sequence Length457
UniProt IDQ6L2V0(100,100)Download
Average pLDDT?89.92
CAZy50 ID78336
CAZy50 RepYes, AAT42702.1
Structure ClusterSC_GT2_clus384
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1122961
KingdomArchaea
PhylumCandidatus Thermoplasmatota
ClassThermoplasmata
OrderThermoplasmatales
FamilyPicrophilaceae
GenusPicrophilus
SpeciesPicrophilus oshimae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGYFQYRLFT  IEKYNNTIRR  LSLMPRYVLI  ALIIFMTLSS  FFVYIIIIRI  HIYNNNLRLI60
TLLWLIPMPF  IIINFLYFLR  LPGEDFRIHR  VIGSCRPVIF  QITTLGFNYK  SVIETVKSVD120
YWYNKLLSEH  RIEFESEIWV  VIEPDGYKKN  KRYFSEIEKM  ARFIVVPEDY  KTLNKTTGKA180
RALQYACDIR  KRDAWIYHQD  EETMVGEDTI  LGIDEFIKTH  KTGVGVGIIL  YPQNFNGRPS240
QMQELSRSYM  DIMSIFSQRS  ERNMLVGFHG  SHIIVSSDIE  DSIGWDFGNR  STAEDLNFEN300
AVRRRYKNVF  YLLKGFAYEK  AALCKMDQLR  QRRRWIRGIM  ESILRKDISR  IRKTVMIFQL360
ISWFSAALSL  FLFVLVIIYK  FSIIIPELAF  LSPFIWFLML  IQYYSGYSMH  RQYIKKLSVY420
VLIKNGLIGA  FVDMISPWYA  ILRLKYTPKK  DFIKKDV457

Predicted 3D structure by AlphaFold2 with pLDDT = 89.92 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MGYFQYRLFT  IEKYNNTIRR  LSLMPRYVLI  ALIIFMTLSS  FFVYIIIIRI  HIYNNNLRLI60
TLLWLIPMPF  IIINFLYFLR  LPGEDFRIHR  VIGSCRPVIF  QITTLGFNYK  SVIETVKSVD120
YWYNKLLSEH  RIEFESEIWV  VIEPDGYKKN  KRYFSEIEKM  ARFIVVPEDY  KTLNKTTGKA180
RALQYACDIR  KRDAWIYHQD  EETMVGEDTI  LGIDEFIKTH  KTGVGVGIIL  YPQNFNGRPS240
QMQELSRSYM  DIMSIFSQRS  ERNMLVGFHG  SHIIVSSDIE  DSIGWDFGNR  STAEDLNFEN300
AVRRRYKNVF  YLLKGFAYEK  AALCKMDQLR  QRRRWIRGIM  ESILRKDISR  IRKTVMIFQL360
ISWFSAALSL  FLFVLVIIYK  FSIIIPELAF  LSPFIWFLML  IQYYSGYSMH  RQYIKKLSVY420
VLIKNGLIGA  FVDMISPWYA  ILRLKYTPKK  DFIKKDV457

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(195-404)

MGYFQYRLFT  IEKYNNTIRR  LSLMPRYVLI  ALIIFMTLSS  FFVYIIIIRI  HIYNNNLRLI60
TLLWLIPMPF  IIINFLYFLR  LPGEDFRIHR  VIGSCRPVIF  QITTLGFNYK  SVIETVKSVD120
YWYNKLLSEH  RIEFESEIWV  VIEPDGYKKN  KRYFSEIEKM  ARFIVVPEDY  KTLNKTTGKA180
RALQYACDIR  KRDAWIYHQD  EETMVGEDTI  LGIDEFIKTH  KTGVGVGIIL  YPQNFNGRPS240
QMQELSRSYM  DIMSIFSQRS  ERNMLVGFHG  SHIIVSSDIE  DSIGWDFGNR  STAEDLNFEN300
AVRRRYKNVF  YLLKGFAYEK  AALCKMDQLR  QRRRWIRGIM  ESILRKDISR  IRKTVMIFQL360
ISWFSAALSL  FLFVLVIIYK  FSIIIPELAF  LSPFIWFLML  IQYYSGYSMH  RQYIKKLSVY420
VLIKNGLIGA  FVDMISPWYA  ILRLKYTPKK  DFIKKDV457

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help