CAZyme3D

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Entry ID

Information for CAZyme ID: AAL68129.1

Basic Information

GenBank IDAAL68129.1
FamilyGH85
Sequence Length656
UniProt IDQ8T8V2(100,100)Download
Average pLDDT?84.61
CAZy50 ID44309
CAZy50 RepYes, AAL68129.1
Structure ClusterSC_GH85_clus45
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID7227
KingdomEukaryota
PhylumArthropoda
ClassInsecta
OrderDiptera
FamilyDrosophilidae
GenusDrosophila
SpeciesDrosophila melanogaster

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDSLESKELT  SISKVMENNE  KASENDKITG  IPTEEEEEEV  VPVKKKRTEE  GGGEIKEVAC60
EKETVQREKC  QDKNTCRCSQ  LEAEPIKDNR  QLLEFRVRSR  DIDWRQYVLP  LDTSVRTTPV120
YLDRQADFVG  STRRQVTEDN  RRELLVCHDM  MGNYLEDRHF  YSSQKYDDYR  FVHWSAVDYF180
CYFSHDYVTI  PPCGWLNAAH  RHGVPVLGTF  IVEATARLDE  FLVSEESVES  TVEALTRLCE240
HFGFEGWLVN  VEVTVPLAKM  PSLYRFVRQL  TAATESRVPH  GRVFWYDSVT  DDGQLRWQNE300
LNSRNAEFFR  HSHGTLINYA  WDEGHLERSA  QQVRREQSPR  HRVFMGLDVF  GRSRKGGFHS360
WETMELIAKN  GFSAGILAPG  WTFETLNRFG  YNIKNPRGDD  QVNASFLARN  EAWWSRIWPT420
LATHPYTSLP  FFTDFCVGSG  RAKFERGWRI  LGEDSPFFNL  SRQSLQPSVP  LGRNAMHHFD480
EAYSGGCSLL  VTNYERAFRL  FVTDFELDRG  VLLLRYVFKI  DGDAVGTMFD  LLVRVTPLRR540
NDQDLHLFCG  DYEGSIVAPQ  RCYLSPHESD  LPSDLFRLHH  DSSSLAAGWQ  MRDYLVKFDG600
PVRVQDIGVK  YQRPSESSTD  AKLGFVYVDG  LTLEDLKDTW  TDIPVYSKHM  WNEQRA656

Predicted 3D structure by AlphaFold2 with pLDDT = 84.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MDSLESKELT  SISKVMENNE  KASENDKITG  IPTEEEEEEV  VPVKKKRTEE  GGGEIKEVAC60
EKETVQREKC  QDKNTCRCSQ  LEAEPIKDNR  QLLEFRVRSR  DIDWRQYVLP  LDTSVRTTPV120
YLDRQADFVG  STRRQVTEDN  RRELLVCHDM  MGNYLEDRHF  YSSQKYDDYR  FVHWSAVDYF180
CYFSHDYVTI  PPCGWLNAAH  RHGVPVLGTF  IVEATARLDE  FLVSEESVES  TVEALTRLCE240
HFGFEGWLVN  VEVTVPLAKM  PSLYRFVRQL  TAATESRVPH  GRVFWYDSVT  DDGQLRWQNE300
LNSRNAEFFR  HSHGTLINYA  WDEGHLERSA  QQVRREQSPR  HRVFMGLDVF  GRSRKGGFHS360
WETMELIAKN  GFSAGILAPG  WTFETLNRFG  YNIKNPRGDD  QVNASFLARN  EAWWSRIWPT420
LATHPYTSLP  FFTDFCVGSG  RAKFERGWRI  LGEDSPFFNL  SRQSLQPSVP  LGRNAMHHFD480
EAYSGGCSLL  VTNYERAFRL  FVTDFELDRG  VLLLRYVFKI  DGDAVGTMFD  LLVRVTPLRR540
NDQDLHLFCG  DYEGSIVAPQ  RCYLSPHESD  LPSDLFRLHH  DSSSLAAGWQ  MRDYLVKFDG600
PVRVQDIGVK  YQRPSESSTD  AKLGFVYVDG  LTLEDLKDTW  TDIPVYSKHM  WNEQRA656

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH85(150-441)

MDSLESKELT  SISKVMENNE  KASENDKITG  IPTEEEEEEV  VPVKKKRTEE  GGGEIKEVAC60
EKETVQREKC  QDKNTCRCSQ  LEAEPIKDNR  QLLEFRVRSR  DIDWRQYVLP  LDTSVRTTPV120
YLDRQADFVG  STRRQVTEDN  RRELLVCHDM  MGNYLEDRHF  YSSQKYDDYR  FVHWSAVDYF180
CYFSHDYVTI  PPCGWLNAAH  RHGVPVLGTF  IVEATARLDE  FLVSEESVES  TVEALTRLCE240
HFGFEGWLVN  VEVTVPLAKM  PSLYRFVRQL  TAATESRVPH  GRVFWYDSVT  DDGQLRWQNE300
LNSRNAEFFR  HSHGTLINYA  WDEGHLERSA  QQVRREQSPR  HRVFMGLDVF  GRSRKGGFHS360
WETMELIAKN  GFSAGILAPG  WTFETLNRFG  YNIKNPRGDD  QVNASFLARN  EAWWSRIWPT420
LATHPYTSLP  FFTDFCVGSG  RAKFERGWRI  LGEDSPFFNL  SRQSLQPSVP  LGRNAMHHFD480
EAYSGGCSLL  VTNYERAFRL  FVTDFELDRG  VLLLRYVFKI  DGDAVGTMFD  LLVRVTPLRR540
NDQDLHLFCG  DYEGSIVAPQ  RCYLSPHESD  LPSDLFRLHH  DSSSLAAGWQ  MRDYLVKFDG600
PVRVQDIGVK  YQRPSESSTD  AKLGFVYVDG  LTLEDLKDTW  TDIPVYSKHM  WNEQRA656

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help