Information for CAZyme ID: AAB62720.1
Basic Information
| GenBank ID | AAB62720.1 |
| Family | GH47 |
| Sequence Length | 670 |
| UniProt ID | O18498(100,100) |
| Average pLDDT? | 81.61 |
| CAZy50 ID | 42416 |
| CAZy50 Rep | Yes, AAB62720.1 |
| Structure Cluster | SC_GH47_clus41 |
| EC Number(s) | 3.2.1.113 |
| Substrates(s) | host glycan |
Taxonomy
| Tax ID | 7108 |
| Kingdom | Eukaryota |
| Phylum | Arthropoda |
| Class | Insecta |
| Order | Lepidoptera |
| Family | Noctuidae |
| Genus | Spodoptera |
| Species | Spodoptera frugiperda |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MTGILPTYQR FVNGVPVPSI SRRSFRLREK YLIVSVLLTF GIVWLGALFY LPEFKSSNSV | 60 |
| NDSVYNVYKR IQKAGPELLM PPPLAQNDVG DFPVIGIAHH GEGGDDPHVI EDRNRLRAKI | 120 |
| EEDMGMKVLE RPQFDVAPSV SSSRGPSKPP VDAIEEPAVG NNAANKDVSP SGPKAESSDK | 180 |
| FVAVALAPGA DPEIKHKLET VKKMMLHAWY NYKLYAWGKN ELKPMSKRAH LSSVFGAGEL | 240 |
| GATIVDGLDT LYLMGLNDEF REGRDWVAEH LHINEIDSDL SVFETTIRFV GGLLSCYALT | 300 |
| GDTMFRDKAA EVGDALLPAF DTPTGLPYAL INPSTKASRQ YHWAGPNSIL SELGTLHLEF | 360 |
| TYLSDVTGRD IYRQKVSRIR EVLDQIDKPG DLYPNFINPR TGQWGQRHMS LGALGDSFYE | 420 |
| YLLKAWLMSG GADEQARIMF DTAMQAALDK MLRVSPSGLA YLAELKYGRI IEEKMDHLSC | 480 |
| FAGGMFALAS TTLDNSMSER YMDVAKKLTN TCHESYARSE TKLGPEAFRF SNAAEARAQK | 540 |
| SNEKVYLLRP ETFESYFIMW RLTKQQMYRD WAWEAVQALE KHCRVEGGYT GLVNVYHANP | 600 |
| QGDDVQQSFF LAETLKYLYL IFGDDSFLPL DEWVFNTEAH PFPIRGKNPL YRAVDKPVLP | 660 |
| EPAHAQNNRI | 670 |
Predicted 3D structure by AlphaFold2 with pLDDT = 81.61 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MTGILPTYQR FVNGVPVPSI SRRSFRLREK YLIVSVLLTF GIVWLGALFY LPEFKSSNSV | 60 |
| NDSVYNVYKR IQKAGPELLM PPPLAQNDVG DFPVIGIAHH GEGGDDPHVI EDRNRLRAKI | 120 |
| EEDMGMKVLE RPQFDVAPSV SSSRGPSKPP VDAIEEPAVG NNAANKDVSP SGPKAESSDK | 180 |
| FVAVALAPGA DPEIKHKLET VKKMMLHAWY NYKLYAWGKN ELKPMSKRAH LSSVFGAGEL | 240 |
| GATIVDGLDT LYLMGLNDEF REGRDWVAEH LHINEIDSDL SVFETTIRFV GGLLSCYALT | 300 |
| GDTMFRDKAA EVGDALLPAF DTPTGLPYAL INPSTKASRQ YHWAGPNSIL SELGTLHLEF | 360 |
| TYLSDVTGRD IYRQKVSRIR EVLDQIDKPG DLYPNFINPR TGQWGQRHMS LGALGDSFYE | 420 |
| YLLKAWLMSG GADEQARIMF DTAMQAALDK MLRVSPSGLA YLAELKYGRI IEEKMDHLSC | 480 |
| FAGGMFALAS TTLDNSMSER YMDVAKKLTN TCHESYARSE TKLGPEAFRF SNAAEARAQK | 540 |
| SNEKVYLLRP ETFESYFIMW RLTKQQMYRD WAWEAVQALE KHCRVEGGYT GLVNVYHANP | 600 |
| QGDDVQQSFF LAETLKYLYL IFGDDSFLPL DEWVFNTEAH PFPIRGKNPL YRAVDKPVLP | 660 |
| EPAHAQNNRI | 670 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.