y
Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna23375.1-v1.0-hybrid |
Family | PL1 |
Protein Properties | Length: 299 Molecular Weight: 34026.6 Isoelectric Point: 7.05 |
Chromosome | Chromosome/Scaffold: 7 Start: 15161456 End: 15162925 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 28 | 203 | 0 |
FEVSGTIHLSSYLSVSSYKTIDGRGRRVKLTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGYVDTELNGSFFPRCYFQ QHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA |
Full Sequence |
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Protein Sequence Length: 299 Download |
MLCVGFVDDG PGSLREGCRK QEPLWILFEV SGTIHLSSYL SVSSYKTIDG RGRRVKLTGK 60 GLRLKECEHI IICNLEFEGG RGHDVDGIQI KPNSRHIWID RCSLRDYDDG YVDTELNGSF 120 FPRCYFQQHD KTMLIGADPS HVGDRCIRVT IHHCFFDGTR QRQPRVRFGK VHLYNNYTRN 180 WGIYAVCASV ESQIYSQCNI YEAGTKKKTF EYYTEKAADR EEAKSGFIRS EGDVFLNGAQ 240 PCTLTGFSED CMFHPSEFYP VWTMEAASDS LKGVLHILTG WQPIQRPPLE QPIMVSIL* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00544 | Pec_lyase_C | 2.0e-30 | 21 | 199 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
COG3866 | PelB | 2.0e-38 | 30 | 269 | 262 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
smart00656 | Amb_all | 8.0e-60 | 40 | 204 | 179 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 5e-32 | 7 | 267 | 51 | 335 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 5e-32 | 7 | 267 | 51 | 335 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1vbl_A | 3e-23 | 42 | 201 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3zsc_A | 2e-22 | 30 | 201 | 52 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 3vmw_A | 1e-17 | 47 | 229 | 82 | 262 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
Sequence Alignments (This image is cropped. Click for full image.) |
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