| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000259620 |
| Family | PL1 |
| Protein Properties | Length: 267 Molecular Weight: 29987.4 Isoelectric Point: 7.9796 |
| Chromosome | Chromosome/Scaffold: 016438186 Start: 3672 End: 5703 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 47 | 138 | 7.1e-23 |
| IVFEVSGTIHLSSCLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYNDGLIYITRQ | |||
| Full Sequence |
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| Protein Sequence Length: 267 Download |
| MASLPYADVD FSLRSMAGRA EGFGQFAIDD CPGSLRKGSR KQEPLWIVFE VSGTIHLSSC 60 LSVSSYKTID GRGQRIKLTG KGLRLKECEH IIVCNLEFEG GRGHDVDGIQ IKPNSRHIWI 120 DRCSLRDYND GLIYITRQNP SHGGDRCIRV TIHHCFFDGT RQRQPRLRFG KVHLYNNYTR 180 NXAIYAVSQA ADREVAKAGF IXSDGDVFLN GAQSCTFAGF SEECMFHPSE FYPHWTMEAA 240 SASLKAIHQI LTGWQSIQQL AQQAETV 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 2.0e-20 | 48 | 208 | 203 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 3.0e-29 | 44 | 218 | 214 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 3.0e-40 | 61 | 211 | 185 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB75748.1 | 0 | 1 | 259 | 1 | 333 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191074.2 | 0 | 1 | 259 | 1 | 323 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002276049.1 | 0 | 1 | 262 | 1 | 326 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311134.1 | 0 | 1 | 261 | 1 | 325 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526780.1 | 0 | 1 | 247 | 1 | 311 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 2e-18 | 9 | 199 | 26 | 265 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 2e-18 | 9 | 199 | 26 | 265 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-17 | 48 | 178 | 49 | 212 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000005 | 60 | 198 | 127 | 314 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.000000004 | 60 | 246 | 143 | 408 | A Chain A, Bacillus Subtilis Pectate Lyase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY275282 | 327 | 1 | 262 | 0 |
| DW066041 | 279 | 29 | 257 | 0 |
| DY277275 | 305 | 4 | 244 | 0 |
| JG177860 | 307 | 21 | 263 | 0 |
| EB434087 | 262 | 29 | 240 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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