y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00041670m |
Family | GH89 |
Protein Properties | Length: 652 Molecular Weight: 75043.1 Isoelectric Point: 5.59 |
Chromosome | Chromosome/Scaffold: 016714 Start: 3556 End: 10063 |
Description | alpha-N-acetylglucosaminidase family / NAGLU family |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH89 | 221 | 628 | 0 |
CFTLQGWLFTYDPFWEPPQMKALLHSVPVGRMIVLDLYAEVKPVWINSDQFYDFEMYGVLDALASGPIDARQSDNSTMVGVGMSMEGIEQNPIVYDLMSE MAFHHRRVDLQVWVETYPTRRYGKPVKGLQDAWWILYHTLYNCTDGKNDKNRDVIVAFPDVEPFVIQTQGLYKSYGKPYSTRSPKNYEKGTSNDAYEHPH LWYNTSVIVHALELFLQYGDEVYDSNTFRYDLVDLTRQVLAKYANDVFIKIIKSYKSNSMNHMITLCQHFLGLVNDLDTLLASHEGFLLGPWLENAKGLA RDRKQEIQYEWNARTQITMWFDNTETKASLLRDYANKYWSGLLRDYYGPRAAIYFKHLLQSMEKNEPFALEEWRREWISLTNNWQSGRKVFATTATGDAL NISRSLYM |
Full Sequence |
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Protein Sequence Length: 652 Download |
HYAHLIRVLR YLRGTMSRRL FYATSSQPTL HAYSDATWAS EHVDRRSVTV EAELRALATT 60 TAEIIWLRWL LADFGVTCAD PTILRCDNTS AIQIANNPIK HELTKHIGVD ASFIRFTVDS 120 NPKWCCTYLL DASDPLFIEI GKLFIEEQIR EYGRTSHIYN CDTFDENTPP LSDPNYISSL 180 GAATFRGMQS GDDDAVWLMQ LCKFSCCIVT PYMDMQGSIT CFTLQGWLFT YDPFWEPPQM 240 KALLHSVPVG RMIVLDLYAE VKPVWINSDQ FYDFEMYGVL DALASGPIDA RQSDNSTMVG 300 VGMSMEGIEQ NPIVYDLMSE MAFHHRRVDL QVWVETYPTR RYGKPVKGLQ DAWWILYHTL 360 YNCTDGKNDK NRDVIVAFPD VEPFVIQTQG LYKSYGKPYS TRSPKNYEKG TSNDAYEHPH 420 LWYNTSVIVH ALELFLQYGD EVYDSNTFRY DLVDLTRQVL AKYANDVFIK IIKSYKSNSM 480 NHMITLCQHF LGLVNDLDTL LASHEGFLLG PWLENAKGLA RDRKQEIQYE WNARTQITMW 540 FDNTETKASL LRDYANKYWS GLLRDYYGPR AAIYFKHLLQ SMEKNEPFAL EEWRREWISL 600 TNNWQSGRKV FATTATGDAL NISRSLYMKY FGNVDLLELE GTSSLGESAS L* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd09272 | RNase_HI_RT_Ty1 | 3.0e-21 | 31 | 127 | 125 | + Ty1/Copia family of RNase HI in long-term repeat retroelements. Ribonuclease H (RNase H) enzymes are divided into two major families, Type 1 and Type 2, based on amino acid sequence similarities and biochemical properties. RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner in the presence of divalent cations. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. RNase HI has also been observed as adjunct domains to the reverse transcriptase gene in retroviruses, in long-term repeat (LTR)-bearing and non-LTR retrotransposons. RNase HI in LTR retrotransposons perform degradation of the original RNA template, generation of a polypurine tract (the primer for plus-strand DNA synthesis), and final removal of RNA primers from newly synthesized minus and plus strands. The catalytic residues for RNase H enzymatic activity, three aspartatic acids and one glutamatic acid residue (DEDD) are unvaried across all RNase H domains. Phylogenetic patterns of RNase HI of LTR retroelements is classified into five major families, Ty3/Gypsy, Ty1/Copia, Bel/Pao, DIRS1 and the vertebrate retroviruses. Ty1/Copia family is widely distributed among the genomes of plants, fungi and animals. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. | ||
pfam05089 | NAGLU | 3.0e-74 | 124 | 327 | 218 | + Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain. Alpha-N-acetylglucosaminidase, a lysosomal enzyme required for the stepwise degradation of heparan sulfate. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterized by neurological dysfunction but relatively mild somatic manifestations. The structure shows that the enzyme is composed of three domains. This central domain has a tim barrel fold. | ||
pfam12972 | NAGLU_C | 1.0e-94 | 333 | 630 | 298 | + Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain. Alpha-N-acetylglucosaminidase, a lysosomal enzyme required for the stepwise degradation of heparan sulfate. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterized by neurological dysfunction but relatively mild somatic manifestations. The structure shows that the enzyme is composed of three domains. This C-terminal domain has an all alpha helical fold. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAE04506.2 | 0 | 116 | 645 | 302 | 821 | OSJNBb0059K02.16 [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC78143.1 | 0 | 116 | 645 | 302 | 821 | hypothetical protein OsI_17702 [Oryza sativa Indica Group] |
GenBank | EEE61812.1 | 0 | 116 | 645 | 602 | 1121 | hypothetical protein OsJ_16433 [Oryza sativa Japonica Group] |
RefSeq | NP_001054095.1 | 0 | 160 | 645 | 48 | 523 | Os04g0650900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002280399.1 | 0 | 116 | 639 | 300 | 813 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2vcc_A | 7e-38 | 122 | 650 | 414 | 891 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In Complex With Disaccharide And Cmp |
PDB | 2vcb_A | 7e-38 | 122 | 650 | 414 | 891 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In Complex With Disaccharide And Cmp |
PDB | 2vca_A | 7e-38 | 122 | 650 | 414 | 891 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In Complex With Disaccharide And Cmp |
PDB | 2vc9_A | 7e-38 | 122 | 650 | 414 | 891 | A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens In Complex With 2-Acetamido-1,2-Dideoxynojirmycin |
PDB | 4a4a_A | 4e-37 | 122 | 650 | 437 | 914 | A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In Complex With Its Substrate Glcnac-Alpha-1,4-Galactose |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GT039480 | 313 | 273 | 584 | 0 |
HO783128 | 448 | 164 | 597 | 0 |
GT049437 | 297 | 340 | 635 | 0 |
GT044006 | 297 | 340 | 635 | 0 |
GD038118 | 227 | 409 | 635 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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