| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00040033m |
| Family | GT30 |
| Protein Properties | Length: 448 Molecular Weight: 49033.6 Isoelectric Point: 9.5113 |
| Chromosome | Chromosome/Scaffold: 057034 Start: 438 End: 3935 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT30 | 47 | 228 | 0 |
| RWPERLGQPSAARPRPGSPLVWFHAVSLGEGMAALPVVRHCAGLHPGLPVLLTTTTLSSFEVIKDLLPDGVIYQFAPLDCPDAIDSFIGYWKPSLVLLME SELWPNLIMSAAAKGIAVALLNARMSLKSFNRWSVPLGLPLVTLMLSKLSLVAPLSTIQAVRFQLLHTPPGIIHFAGDLKYA | |||
| Full Sequence |
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| Protein Sequence Length: 448 Download |
| MRPARAPAPA AARGGLALYE LYRAASRAAA PAVLLWRRLQ GLEHPTRWPE RLGQPSAARP 60 RPGSPLVWFH AVSLGEGMAA LPVVRHCAGL HPGLPVLLTT TTLSSFEVIK DLLPDGVIYQ 120 FAPLDCPDAI DSFIGYWKPS LVLLMESELW PNLIMSAAAK GIAVALLNAR MSLKSFNRWS 180 VPLGLPLVTL MLSKLSLVAP LSTIQAVRFQ LLHTPPGIIH FAGDLKYAVG DVNVMENEVN 240 KINDLRQQFS NRPLWMAASI HRGEEQVILR VHEELIKIYP TLLLILVPRH PQDCKTFSLA 300 LKKQEVNFVL RSTKEVVSSG TRVYMVDTLG ELRMLYRVTP VAVIGGSFLP GLAGHNISEA 360 AAAGCAVVTG PHVGHFYHML LDMWQINPSA VKQVAGEFKL LQTLKELLGD AETLGACQRA 420 AKDAFSIMSH GVVNRVWNLV CRFAIDF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 4.0e-56 | 44 | 229 | 186 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 2.0e-98 | 36 | 440 | 410 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 7.0e-107 | 36 | 443 | 409 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN31913.1 | 0 | 1 | 446 | 1 | 442 | unknown [Zea mays] |
| GenBank | EEC71834.1 | 0 | 1 | 445 | 1 | 444 | hypothetical protein OsI_04493 [Oryza sativa Indica Group] |
| RefSeq | XP_002322900.1 | 0 | 12 | 440 | 5 | 433 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002458792.1 | 0 | 1 | 447 | 1 | 446 | hypothetical protein SORBIDRAFT_03g040370 [Sorghum bicolor] |
| RefSeq | XP_002528642.1 | 0 | 8 | 438 | 3 | 433 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 2e-23 | 67 | 420 | 43 | 356 | A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia Coli |
| PDB | 2xcu_C | 2e-23 | 67 | 420 | 43 | 356 | A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia Coli |
| PDB | 2xcu_B | 2e-23 | 67 | 420 | 43 | 356 | A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia Coli |
| PDB | 2xcu_A | 2e-23 | 67 | 420 | 43 | 356 | A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia Coli |
| PDB | 2xci_D | 2e-23 | 67 | 420 | 43 | 356 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| KDO transfer to lipid IVA I | KDOTRANS-RXN | EC-2.4.99.12 | lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| KDO transfer to lipid IVA I | KDOTRANS2-RXN | EC-2.4.99.13 | (KDO)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CB675948 | 250 | 36 | 285 | 0 |
| DV503346 | 229 | 218 | 446 | 0 |
| FE616521 | 217 | 138 | 353 | 0 |
| DY279419 | 319 | 36 | 354 | 0 |
| FE616521 | 25 | 354 | 378 | 2.5 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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