| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g63840.1 |
| Family | GT30 |
| Protein Properties | Length: 458 Molecular Weight: 50371.7 Isoelectric Point: 9.1085 |
| Chromosome | Chromosome/Scaffold: 1 Start: 37039556 End: 37043234 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT30 | 46 | 227 | 0 |
| RWPERLGRPSVARPRPGSPLVWFHAVSLGEGMAALPVVRHCARLHPGLPILLTTTTLSSFEVMKDLLPDGVIYQFAPLDCPDAIESFIGYWKPNLILLME SELWPNLILSAAEKGIAVVLLNARMSLKSFNRWSLPLGLQLVSLMLSKLSLVIPLSTIQAVRFQLLHAPPQIIHFAGDLKYA | |||
| Full Sequence |
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| Protein Sequence Length: 458 Download |
| MRTARTPASA ARGGRALYEL YRAASRAAAP AALLWRRLRG LEHPSRWPER LGRPSVARPR 60 PGSPLVWFHA VSLGEGMAAL PVVRHCARLH PGLPILLTTT TLSSFEVMKD LLPDGVIYQF 120 APLDCPDAIE SFIGYWKPNL ILLMESELWP NLILSAAEKG IAVVLLNARM SLKSFNRWSL 180 PLGLQLVSLM LSKLSLVIPL STIQAVRFQL LHAPPQIIHF AGDLKYAVGD IAAGEKEVAA 240 IEDLQQQFSN RPIWMAASIH KGEDEIILRV HDELTRAYPT LLLILVPRHP EDSKNVSQTL 300 KKQKVNFVLR STREVVSSNT SIYVVDTLGE LRMLYRVTPI AVIGGSFLPG LAGHNISEAA 360 AVGCAVMTGP SVGHFYHMLV EMWQINPLAV KQVKGEYELL EALKQLLGDS RALEACQRAA 420 KDAFSFMSDG VVNRVWNLVH PFTIGSQTDT CDSFSSS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 2.0e-55 | 43 | 228 | 186 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 7.0e-99 | 42 | 442 | 405 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 7.0e-110 | 42 | 442 | 402 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005739 | mitochondrion |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009058 | biosynthetic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN31913.1 | 0 | 1 | 453 | 1 | 450 | unknown [Zea mays] |
| GenBank | EEC71834.1 | 0 | 1 | 457 | 1 | 457 | hypothetical protein OsI_04493 [Oryza sativa Indica Group] |
| RefSeq | XP_002322900.1 | 0 | 11 | 440 | 5 | 434 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002458792.1 | 0 | 1 | 453 | 1 | 453 | hypothetical protein SORBIDRAFT_03g040370 [Sorghum bicolor] |
| RefSeq | XP_002528642.1 | 0 | 8 | 437 | 3 | 433 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 5e-27 | 66 | 419 | 43 | 356 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 2xcu_C | 5e-27 | 66 | 419 | 43 | 356 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 2xcu_B | 5e-27 | 66 | 419 | 43 | 356 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 2xcu_A | 5e-27 | 66 | 419 | 43 | 356 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 2xci_D | 5e-27 | 66 | 419 | 43 | 356 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| KDO transfer to lipid IVA I | KDOTRANS-RXN | EC-2.4.99.12 | lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| KDO transfer to lipid IVA I | KDOTRANS2-RXN | EC-2.4.99.13 | (KDO)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CB675948 | 282 | 3 | 284 | 0 |
| DV503346 | 237 | 217 | 453 | 0 |
| CB675949 | 178 | 281 | 458 | 0 |
| DY279419 | 312 | 42 | 353 | 0 |
| DY279419 | 61 | 347 | 407 | 1.8 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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