y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00032512m |
Family | GH16 |
Protein Properties | Length: 295 Molecular Weight: 32608.3 Isoelectric Point: 4.6117 |
Chromosome | Chromosome/Scaffold: 0128826 Start: 703 End: 1769 |
Description | xyloglucan endotransglucosylase/hydrolase 25 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH16 | 61 | 217 | 1.4e-25 |
SLVLDKSSGGGFNSTEKYLFGEFSVEMKLVPGNSAGTVTSFYLTSGEGDEHDEIDMEFMGNSSGAPTVLNTNVWASGDGKKEHQFYLWFDPSADFHKYTI IWNAKNIIFRVDDVAVRAFRRYDDLPYPDARPMAVHATLWDGSYWATEKGEVPIDWA |
Full Sequence |
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Protein Sequence Length: 295 Download |
MARRSLAPLA PPPALAVTAV VLALALCFNH PASAQSAWLD EFRTDGEVRS DFDASGKQVA 60 SLVLDKSSGG GFNSTEKYLF GEFSVEMKLV PGNSAGTVTS FYLTSGEGDE HDEIDMEFMG 120 NSSGAPTVLN TNVWASGDGK KEHQFYLWFD PSADFHKYTI IWNAKNIIFR VDDVAVRAFR 180 RYDDLPYPDA RPMAVHATLW DGSYWATEKG EVPIDWAAAP FVVSYRGYTA NACVTRGGGG 240 RTSCPAGRNE WMDRELDDTD RLTVAWARRN CLQYNYCEDG WRFPEGFPGE CSRE* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06955 | XET_C | 3.0e-14 | 244 | 291 | 51 | + Xyloglucan endo-transglycosylase (XET) C-terminus. This family represents the C-terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyzes the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall. Note that all family members contain the pfam00722 domain. | ||
cd02175 | GH16_lichenase | 8.0e-18 | 68 | 167 | 102 | + lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure. | ||
pfam00722 | Glyco_hydro_16 | 2.0e-55 | 56 | 217 | 163 | + Glycosyl hydrolases family 16. | ||
PLN03161 | PLN03161 | 1.0e-63 | 62 | 293 | 239 | + Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional | ||
cd02176 | GH16_XET | 6.0e-105 | 55 | 291 | 242 | + Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005618 | cell wall |
GO:0005975 | carbohydrate metabolic process |
GO:0006073 | cellular glucan metabolic process |
GO:0016762 | xyloglucan:xyloglucosyl transferase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF85167.1 | 0 | 9 | 294 | 2 | 287 | unknown [Zea mays] |
GenBank | ACG39534.1 | 0 | 9 | 293 | 2 | 289 | xyloglucan endotransglycosylase/hydrolase protein 8 precursor [Zea mays] |
GenBank | ACS13757.1 | 0 | 37 | 293 | 24 | 282 | xyloglucan xyloglucosyl transferase [Hordeum vulgare] |
RefSeq | NP_001130144.1 | 0 | 9 | 294 | 2 | 287 | hypothetical protein LOC100191238 [Zea mays] |
RefSeq | XP_002445324.1 | 0 | 12 | 293 | 9 | 290 | hypothetical protein SORBIDRAFT_07g009410 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1un1_B | 0 | 55 | 294 | 34 | 275 | A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase From Neisseria Meningitidis |
PDB | 1un1_A | 0 | 55 | 294 | 34 | 275 | A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase From Neisseria Meningitidis |
PDB | 1umz_B | 0 | 55 | 294 | 34 | 275 | A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. |
PDB | 1umz_A | 0 | 55 | 294 | 34 | 275 | A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. |
PDB | 2uwb_B | 0 | 61 | 282 | 41 | 259 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
Signal Peptide | ||||
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Cleavage Site | ||||
34 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CD437945 | 260 | 38 | 295 | 0 |
DR799053 | 263 | 27 | 287 | 0 |
FL943068 | 212 | 27 | 238 | 0 |
FL899078 | 212 | 27 | 238 | 0 |
DR798740 | 253 | 27 | 277 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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