y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g18600.1 |
Family | GH16 |
Protein Properties | Length: 302 Molecular Weight: 33708.6 Isoelectric Point: 5.2098 |
Chromosome | Chromosome/Scaffold: 3 Start: 17132531 End: 17134047 |
Description | xyloglucan endotransglucosylase/hydrolase 15 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH16 | 42 | 208 | 1e-26 |
RYKAEGENQQFALELDKVSGSGFKSKAKYLFGEFSVQMRLVDGNSAGTVTSFYLTSGEGSTHDEIDIEFMGNKSGDPYVMNTNVWASGDGKKEHQFYLWF DPSADFHTYKITWNPKNIIFEVDNVPVRTFKKYADLPYPTSRPMTVHATLWDGSYWATRHGDVKIHW |
Full Sequence |
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Protein Sequence Length: 302 Download |
MAAKQLPLLA ALAVLAVLAA AAAAEYNFDD QFDVIGERDH IRYKAEGENQ QFALELDKVS 60 GSGFKSKAKY LFGEFSVQMR LVDGNSAGTV TSFYLTSGEG STHDEIDIEF MGNKSGDPYV 120 MNTNVWASGD GKKEHQFYLW FDPSADFHTY KITWNPKNII FEVDNVPVRT FKKYADLPYP 180 TSRPMTVHAT LWDGSYWATR HGDVKIHWRG DDPFVVSYRE YHATGCVAHP KAPPPPSSSN 240 STKVEAPPTK CPAGSDAWMD RELDEEDLKT VAWAERNCLS YNYCADGWRF PKGFPGECGR 300 D* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00413 | Glyco_hydrolase_16 | 5.0e-17 | 57 | 200 | 150 | + glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues. | ||
cd02175 | GH16_lichenase | 3.0e-21 | 48 | 195 | 158 | + lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure. | ||
PLN03161 | PLN03161 | 2.0e-67 | 25 | 298 | 279 | + Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional | ||
pfam00722 | Glyco_hydro_16 | 1.0e-68 | 28 | 210 | 184 | + Glycosyl hydrolases family 16. | ||
cd02176 | GH16_XET | 1.0e-116 | 27 | 298 | 274 | + Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005618 | cell wall |
GO:0005975 | carbohydrate metabolic process |
GO:0006073 | cellular glucan metabolic process |
GO:0016762 | xyloglucan:xyloglucosyl transferase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAT94293.1 | 0 | 28 | 301 | 26 | 283 | endotransglucosylase/hydrolase XTH1 [Triticum aestivum] |
GenBank | AAT94294.1 | 0 | 28 | 301 | 26 | 283 | endotransglucosylase/hydrolase XTH2 [Triticum aestivum] |
GenBank | AAT94296.1 | 0 | 22 | 301 | 21 | 287 | endotransglucosylase/hydrolase XTH4 [Triticum aestivum] |
EMBL | CAA62848.1 | 0 | 17 | 300 | 20 | 288 | PM2 [Hordeum vulgare subsp. vulgare] |
EMBL | CAC40808.1 | 0 | 27 | 300 | 22 | 279 | Xet2 protein [Festuca pratensis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1un1_B | 0 | 39 | 301 | 28 | 275 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
PDB | 1un1_A | 0 | 39 | 301 | 28 | 275 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
PDB | 1umz_B | 0 | 39 | 301 | 28 | 275 | A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. |
PDB | 1umz_A | 0 | 39 | 301 | 28 | 275 | A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. |
PDB | 2uwb_B | 0 | 52 | 289 | 40 | 259 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
Transmembrane Domains | ||||
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Start | End | |||
7 | 24 |
Signal Peptide | ||||
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Cleavage Site | ||||
24 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR356026 | 272 | 27 | 297 | 0 |
DV478462 | 204 | 25 | 228 | 0 |
CN011771 | 254 | 48 | 301 | 0 |
CN011162 | 236 | 50 | 285 | 0 |
CT842961 | 276 | 28 | 302 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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