y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10041275 |
Family | CBM20 |
Protein Properties | Length: 1058 Molecular Weight: 116014 Isoelectric Point: 6.0088 |
Chromosome | Chromosome/Scaffold: 280 Start: 1739592 End: 1746204 |
Description | catalytics;carbohydrate kinases;phosphoglucan, water dikinases |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM20 | 13 | 96 | 5.8e-21 |
VQLSICLRHQVQFGEHVVMLGSTKELGSWKKNVPLNWTEGGWVCDLEFKGGQSVEYKFAVVDNDKRTVWEGGENRNLQLPKEGS |
Full Sequence |
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Protein Sequence Length: 1058 Download |
MKQLKSNSSP GRVQLSICLR HQVQFGEHVV MLGSTKELGS WKKNVPLNWT EGGWVCDLEF 60 KGGQSVEYKF AVVDNDKRTV WEGGENRNLQ LPKEGSYDML CQWNATREHI DLLPTSSEQK 120 QHKREKIVPN EASPPTHPDG EPSPFVGQWQ GKAASFMRSN EHGNRESQMK WDTSGLEGLS 180 LKLVESDQGA RNWWMKLEVV RDLIASSLDS KDRMDALWIN TGQIQCFEGG GHHRPNRHAE 240 ISRQIFRELE RISSRKDTSP QEVLVIRKIH PCLPSFKAEF TASVPLTRIR DIAHRNDIPH 300 DLKQEIKHTI QNKLHRNAGP EDLIATEAML ARITKNPGEY NAAFVEQFKI FHQELKDFFN 360 AGSLAEQLES IKESFDDKGL SALRLFLDCK KILDASKQST SIVQLMETIQ SLNGLRDTIG 420 KGLESGLRND ASDAAIAMRQ KWRLCEIGLE DYSFVLFSRF INELEAMGGA KWLTDNSESK 480 CVSSWNDPLA SLIVGVHQLA LSGWKPKECT AIENELRAWQ ERGLSEKEGD EDGRMIWALR 540 LKATLDRARR LTEEYSEALL HIFPEKVQIL GKALGVPENS VRTYTEAEIR AGVVFQVSKL 600 CTLLLKAVRS TLGSQGWDVL VPGAAVGTLI QVESIVPGSL PPSAKGPIIL VVSKADGDEE 660 VTAAGSNIVG VVLLQELPHL SHLGVRARQE KVTFVTCEDE DRVAGIKMLV GKLVRYLDPG 720 ASARGVILLA DADPLTSGAK AASCGRLASL AAVSSNVSNE KQVSASFQVP KGLVIPFGSM 780 ELALEQSKST ETFKSLIEQI EGATMEGGAL DKLCSQLQEL ICSLQPPKDV LDSVTQVFLG 840 NPCLIVRSSA NVEDLAGMSA AGLYDSIPNV SPSNAAVFGS AVSRVWGSLY TRRAVLSRRA 900 AGVSQKEATM AVLVQEMLSP ELSFVLHTLS PTDNDSNLVE AEIASGLGET LASGTRGTPW 960 RICSGKLDGS VKTLAFANFS EEMVVLGGSA ADGEVRHLTV DYSKKELTVD SGFRNQIGQR 1020 LGAIGCYLER EFGCPQDVEG CMVGEEVYIV QTRPQPH* 1080 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd05467 | CBM20 | 9.0e-20 | 14 | 103 | 96 | + The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch. | ||
TIGR01418 | PEP_synth | 3.0e-20 | 738 | 1055 | 332 | + phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes [Energy metabolism, Glycolysis/gluconeogenesis]. | ||
PRK06241 | PRK06241 | 3.0e-36 | 765 | 1054 | 303 | + phosphoenolpyruvate synthase; Validated | ||
cd05818 | CBM20_water_dikinase | 5.0e-45 | 12 | 103 | 92 | + Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch. | ||
pfam01326 | PPDK_N | 2.0e-54 | 731 | 1055 | 328 | + Pyruvate phosphate dikinase, PEP/pyruvate binding domain. This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0005524 | ATP binding |
GO:0005975 | carbohydrate metabolic process |
GO:0016301 | kinase activity |
GO:0016310 | phosphorylation |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACZ66259.1 | 0 | 12 | 1057 | 89 | 1202 | glucan/water dikinase [Solanum tuberosum] |
EMBL | CBI39424.1 | 0 | 2 | 1057 | 66 | 1149 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_198009.3 | 0 | 5 | 1056 | 66 | 1195 | ATGWD3; carbohydrate kinase/ catalytic/ phosphoglucan, water dikinase [Arabidopsis thaliana] |
RefSeq | XP_002265211.1 | 0 | 2 | 1057 | 66 | 1188 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002518612.1 | 0 | 11 | 1056 | 74 | 1174 | chloroplast alpha-glucan water dikinase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1kum_A | 0.00002 | 8 | 93 | 2 | 94 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A Resolution |
PDB | 1kul_A | 0.00002 | 8 | 93 | 2 | 94 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A Resolution |
PDB | 1acz_A | 0.00002 | 8 | 93 | 2 | 94 | A Chain A, Glucoamylase, Granular Starch-Binding Domain Complex With Cyclodextrin, Nmr, 5 Structures |
PDB | 1ac0_A | 0.00002 | 8 | 93 | 2 | 94 | A Chain A, Glucoamylase, Granular Starch-Binding Domain Complex With Cyclodextrin, Nmr, Minimized Average Structure |
PDB | 3bmw_A | 0.00006 | 17 | 103 | 584 | 681 | A Chain A, Glucoamylase, Granular Starch-Binding Domain Complex With Cyclodextrin, Nmr, Minimized Average Structure |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778000 | 875 | 240 | 1056 | 0 |
HO794745 | 723 | 385 | 1056 | 0 |
EL595870 | 438 | 501 | 887 | 0 |
HO794745 | 46 | 347 | 392 | 0.000000000006 |
EL595870 | 20 | 887 | 906 | 5.6 |
Sequence Alignments (This image is cropped. Click for full image.) |
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