y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10000070m |
Family | CBM20 |
Protein Properties | Length: 1196 Molecular Weight: 131154 Isoelectric Point: 6.2865 |
Chromosome | Chromosome/Scaffold: 6 Start: 9195393 End: 9201160 |
Description | catalytics;carbohydrate kinases;phosphoglucan, water dikinases |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM20 | 75 | 159 | 5.2e-21 |
KVKLNVRLDHQVNFGEHVAMFGSAKEIGSWKKKSPLNWTENGWVCELNLDGGQVLEYKFVIVKDDGSLSWESGDNRVLKLPNSGN |
Full Sequence |
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Protein Sequence Length: 1196 Download |
MESIGSHHCC SSPFTFITRN SSSLPKLVNF TRRVHLSHQS SHRLRNSSSR LTCSAASSSS 60 TIEEQRKKED GSGTKVKLNV RLDHQVNFGE HVAMFGSAKE IGSWKKKSPL NWTENGWVCE 120 LNLDGGQVLE YKFVIVKDDG SLSWESGDNR VLKLPNSGNF SVVCHWDATR ETLDLPHEVG 180 GNDGGGEERG NHDVGDERVV GSENGAQLQK STLGGQWQGK DASFMRSNDH GNREVGRNWN 240 TTGLEGTALK MVEGDRNSKN WWRKLEMVRE VIVGTVEREE KLKALIYSAI YLKWINTGQI 300 PCFEDGGHHR PNRHAEISRL IFRELEHICS KKDASAEEVL VARKIHPCLP SFKAEFTAAV 360 PLTRIRDIAH RNDIPHDLKQ EIKHTIQNKL HRNAGPEDLI ATEAMLLRIT ETPGKYSGDF 420 VEQFKIFHNE LKDFFNAGSL TEQLDSMKIS MDDKGLSALS LFFECKKRLD SSGESTNVME 480 LIKTMHSLAS LRETIIKELN SGLRNDAPDT AIAMRQKWRL CEIGLEDYFF VLLSRFLNAL 540 ESMGGADQLA KDVASRKVAS WNDPLDALVL GVHQVGLSGW KQEECLAIGN ELLAWRERDL 600 LEKEGGEDGK TIWAMRLKAT LDRARRLTAE YSDLLLQIFP PNVEILGKAL GIPENSVKTY 660 TEAEIRAGII FQISKLCTVL LKAVRNSLGS EGWDVVVPGS TSGTLVQVES IVPGSLPATS 720 GGPIILLVNK ADGDEEVSAA NGNIAGVMLL QELPHLSHLG VRARQEKIVF VTCDDDEKVA 780 DIRRLVGKFV RLEASPSHVN LILSTEDRSR TPKFNANKKT DKNSLSKKKT DKRRIPIHDE 840 ESTPVSSSSD SLLYSSKDIP SGGIIALADA DVPTSGSKSA ACGLLASLAE ASSSVHSEHG 900 VPASFKVPTG VVIPFGSMEL ALKESNSEEK FASLLEKLET ARPEGGELDT ICDQIHEVMK 960 SLQVPEETIS SISKAFPKDA RLIVRSSANV EDLAGMSAAG LYESIPNVSP SDPLVFSDSV 1020 CQVWASLYTR RAVLSRRAAG VTQKEASMAV LVQEMLSPDL SFVLHTVSPA DPDSNLVEAE 1080 IAPGLGETLA SGTRGTPWRL ASGKLDGIVQ TLAFANFSEE LFVSGTGPAD GKYVRLTVDY 1140 SKKRLTVDSV FRQQLGQRLG SVGFFLERNF GCAQDVEGCL VGEDVYIVQS RPQPL* 1200 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR01418 | PEP_synth | 1.0e-22 | 902 | 1193 | 314 | + phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes [Energy metabolism, Glycolysis/gluconeogenesis]. | ||
cd05467 | CBM20 | 6.0e-24 | 75 | 166 | 98 | + The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch. | ||
PRK06241 | PRK06241 | 1.0e-37 | 903 | 1192 | 295 | + phosphoenolpyruvate synthase; Validated | ||
pfam01326 | PPDK_N | 5.0e-54 | 903 | 1193 | 294 | + Pyruvate phosphate dikinase, PEP/pyruvate binding domain. This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). | ||
cd05818 | CBM20_water_dikinase | 2.0e-54 | 75 | 166 | 92 | + Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch. |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0005524 | ATP binding |
GO:0005975 | carbohydrate metabolic process |
GO:0016301 | kinase activity |
GO:0016310 | phosphorylation |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAU93516.1 | 0 | 1 | 1195 | 1 | 1196 | chloroplast alpha-glucan water dikinase isoform 3 [Arabidopsis thaliana] |
RefSeq | NP_001119280.1 | 0 | 1 | 844 | 1 | 845 | ATGWD3; carbohydrate kinase/ catalytic/ phosphoglucan, water dikinase [Arabidopsis thaliana] |
RefSeq | NP_198009.3 | 0 | 1 | 1195 | 1 | 1196 | ATGWD3; carbohydrate kinase/ catalytic/ phosphoglucan, water dikinase [Arabidopsis thaliana] |
RefSeq | XP_002265211.1 | 0 | 1 | 1194 | 1 | 1187 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002518612.1 | 0 | 21 | 1194 | 10 | 1174 | chloroplast alpha-glucan water dikinase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2ols_A | 0.000000007 | 871 | 1195 | 16 | 338 | A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase From Neisseria Meningitidis |
PDB | 2vn7_A | 0.0000005 | 88 | 155 | 509 | 583 | A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase From Neisseria Meningitidis |
PDB | 2vn4_A | 0.0000005 | 88 | 155 | 509 | 583 | A Chain A, Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina |
PDB | 1kum_A | 0.000003 | 74 | 170 | 5 | 108 | A Chain A, Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina |
PDB | 1kul_A | 0.000003 | 74 | 170 | 5 | 108 | A Chain A, Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778000 | 894 | 316 | 1196 | 0 |
HO794745 | 737 | 466 | 1196 | 0 |
EX050720 | 284 | 910 | 1193 | 0 |
EV093821 | 283 | 918 | 1196 | 0 |
HO794745 | 45 | 423 | 467 | 0.000000005 |
Sequence Alignments (This image is cropped. Click for full image.) |
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