y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29848.m004502 |
Family | AA2 |
Protein Properties | Length: 760 Molecular Weight: 84994.1 Isoelectric Point: 6.0598 |
Chromosome | Chromosome/Scaffold: 29848 Start: 324237 End: 330264 |
Description | debranching enzyme 1 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA2 | 488 | 743 | 0 |
ADPTIPGKLLRLLFHDCFVEGCDASVLLRGNGTERSDPANTSLGGFSVIDSAKRLLEIFCPGTVSCADIVALAARDAVAITGGPLIQIPTGRRDGRVSSS ANVRPNIVDTSFTMNEMIKIFSTKGLSLDDLVTLSGAHTIGTAHCSAFSDRFHEDSKGKLKLIDSTLDSTYANELMRICPAEASSSILVNNDPETSSAFD NQYYRNLLAHKGLFQSDSVLLDDARTRRQVQDFADDEVRFFDSWSRSFLKLTSIGV |
Full Sequence |
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Protein Sequence Length: 760 Download |
MKIAVEGCMH GDLDTVYETI KHTETLHNIK IDLLLCCGDF QAVRNKKDMD SLAVPSKYRE 60 MKSFWKYYSG QELAPVPTIF IGGNHEASNY LWELYYGGWA APNIYFLGFA GVVKFGNIRI 120 GGLSGIYNAR DYNLGHHERP PYNQNTIKSV YHVREYDVHK LMQVEEPIDI FLSHDWPLGI 180 TDCGNWKQLV RYKPHFENEI QKRTLGSKAA AQLLEKLRPP YWFSAHLHCK FAALVQHGED 240 GPVTKFLALD KCLPGKKFLQ IFDIESEPGP YEIQYDEEWL AITRKFNSIF PLTFRSANFR 300 GTQLQMEDCR QWVRSRLQER GAKPYDFART VPPFDPSQPD LNNSFSDCPR NPQTESLLQL 360 LELPYLLDST SESREPTRSP TSLVLGGSSA EDSEDIPIDD VDDSEELVET GSSYKPGERV 420 IAVLLYSMMG KGQRRMQQLV SRCKRETRDG SPIAPTASMA RRLYGRVAAS CPSVEFMVAN 480 TVRSASSADP TIPGKLLRLL FHDCFVEGCD ASVLLRGNGT ERSDPANTSL GGFSVIDSAK 540 RLLEIFCPGT VSCADIVALA ARDAVAITGG PLIQIPTGRR DGRVSSSANV RPNIVDTSFT 600 MNEMIKIFST KGLSLDDLVT LSGAHTIGTA HCSAFSDRFH EDSKGKLKLI DSTLDSTYAN 660 ELMRICPAEA SSSILVNNDP ETSSAFDNQY YRNLLAHKGL FQSDSVLLDD ARTRRQVQDF 720 ADDEVRFFDS WSRSFLKLTS IGVKTGEEGE IRQTCSLING 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00141 | peroxidase | 2.0e-5 | 692 | 723 | 32 | + Peroxidase. | ||
pfam00141 | peroxidase | 1.0e-56 | 478 | 627 | 151 | + Peroxidase. | ||
PLN03030 | PLN03030 | 2.0e-76 | 465 | 759 | 306 | + cationic peroxidase; Provisional | ||
cd00693 | secretory_peroxidase | 5.0e-145 | 468 | 758 | 294 | + Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. | ||
cd00844 | MPP_Dbr1_N | 4.0e-170 | 3 | 259 | 262 | + Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. |
Gene Ontology | |
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GO Term | Description |
GO:0004601 | peroxidase activity |
GO:0006397 | mRNA processing |
GO:0006979 | response to oxidative stress |
GO:0016787 | hydrolase activity |
GO:0016788 | hydrolase activity, acting on ester bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001151946.1 | 0 | 1 | 398 | 1 | 395 | lariat debranching enzyme [Zea mays] |
RefSeq | NP_567881.1 | 0 | 1 | 384 | 1 | 382 | calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002283617.1 | 0 | 1 | 387 | 1 | 387 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324932.1 | 0 | 1 | 405 | 1 | 422 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515390.1 | 0 | 1 | 760 | 1 | 760 | RNA lariat debranching enzyme, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3hdl_A | 0 | 470 | 759 | 10 | 303 | A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree |
PDB | 1qo4_A | 0 | 468 | 760 | 9 | 305 | A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree |
PDB | 1pa2_A | 0 | 468 | 760 | 9 | 305 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
PDB | 1sch_B | 0 | 468 | 759 | 8 | 294 | A Chain A, Peanut Peroxidase |
PDB | 1sch_A | 0 | 468 | 759 | 8 | 294 | A Chain A, Peanut Peroxidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT506635 | 256 | 46 | 301 | 0 |
EL423622 | 277 | 59 | 335 | 0 |
EL451654 | 271 | 1 | 271 | 0 |
CV247733 | 253 | 63 | 315 | 0 |
CN191088 | 262 | 1 | 262 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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