##gff-version 3 ##sequence-region NZ_JH815204 1 12656 # conversion-by bp_genbank2gff3.pl # organism Barnesiella intestinihominis YIT 11860 # Note Barnesiella intestinihominis YIT 11860 supercont1.2, whole genome shotgun sequence. # date 08-JAN-2025 NZ_JH815204 GenBank region 1 12656 . + 1 ID=NZ_JH815204;Dbxref=BioProject:PRJNA224116,HMP:9448,taxon:742726;Name=NZ_JH815204;Note=Barnesiella intestinihominis YIT 11860 supercont1.2%2C whole genome shotgun sequence.,REFSEQ INFORMATION: The reference sequence is identical to JH815204.1. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by Morotomi,M. (Yakult Central Institute for Microbiological Research,Japan). Bacteria provided by Morotomi,M. (Yakult Central Institute for Microbiological Research,Japan). Please be aware that the annotation is done automatically with little or no manual curation. Gene Calling Method: Prodigal. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nFinishing Goal :: High-Quality Draft\nCurrent Finishing Status :: High-Quality Draft\nAssembly Method :: allpaths v. R42667\nAssembly Name :: Barn_inte_YIT_11860_V1\nGenome Coverage :: 130x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##;comment1=REFSEQ INFORMATION: The reference sequence is identical to JH815204.1. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by Morotomi%2C M. (Yakult Central Institute for Microbiological Research%2C Japan). Bacteria provided by Morotomi%2C M. (Yakult Central Institute for Microbiological Research%2C Japan). Please be aware that the annotation is done automatically with little or no manual curation. Gene Calling Method: Prodigal. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Assembly-Data-START##\nFinishing Goal :: High-Quality Draft\nCurrent Finishing Status :: High-Quality Draft\nAssembly Method :: allpaths v. R42667\nAssembly Name :: Barn_inte_YIT_11860_V1\nGenome Coverage :: 130x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##;date=08-JAN-2025;mol_type=genomic DNA;organism=Barnesiella intestinihominis YIT 11860;strain=YIT 11860;submitter_seqid=supercont1.2;type_material=type strain of Barnesiella intestinihominis NZ_JH815204 GenBank gene 1 3237 . + 1 ID=HMPREF9448_RS05240;Dbxref=GeneID:77848366;Name=HMPREF9448_RS05240;old_locus_tag=HMPREF9448_01067 NZ_JH815204 GenBank mRNA 1 3237 . + 1 ID=HMPREF9448_RS05240;Parent=HMPREF9448_RS05240 NZ_JH815204 GenBank CDS 1 3237 . + 1 ID=HMPREF9448_RS05240;Parent=HMPREF9448_RS05240;Dbxref=GeneID:77848366;gO_component=GO:0009279 - cell outer membrane [Evidence IEA];gO_function=GO:0022857 - transmembrane transporter activity [Evidence IEA];Name=HMPREF9448_RS05240;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008861555.1;old_locus_tag=HMPREF9448_01067;product=SusC/RagA family TonB-linked outer membrane protein;protein_id=WP_040296069.1;transl_table=11;translation=length.1078 NZ_JH815204 GenBank exon 1 3237 . + 1 Parent=HMPREF9448_RS05240 NZ_JH815204 GenBank gene 3270 5033 . + 1 ID=HMPREF9448_RS05245;Dbxref=GeneID:77848367;Name=HMPREF9448_RS05245;old_locus_tag=HMPREF9448_01068 NZ_JH815204 GenBank mRNA 3270 5033 . + 1 ID=HMPREF9448_RS05245;Parent=HMPREF9448_RS05245 NZ_JH815204 GenBank CDS 3270 5033 . + 1 ID=HMPREF9448_RS05245;Parent=HMPREF9448_RS05245;Dbxref=GeneID:77848367;Name=HMPREF9448_RS05245;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008861556.1;old_locus_tag=HMPREF9448_01068;product=SusD/RagB family nutrient-binding outer membrane lipoprotein;protein_id=WP_008861556.1;transl_table=11;translation=length.587 NZ_JH815204 GenBank exon 3270 5033 . + 1 Parent=HMPREF9448_RS05245 NZ_JH815204 GenBank gene 5053 6984 . + 1 ID=HMPREF9448_RS05250;Dbxref=GeneID:77848368;Name=HMPREF9448_RS05250;old_locus_tag=HMPREF9448_01069 NZ_JH815204 GenBank mRNA 5053 6984 . + 1 ID=HMPREF9448_RS05250;Parent=HMPREF9448_RS05250 NZ_JH815204 GenBank CDS 5053 6984 . + 1 ID=HMPREF9448_RS05250;Parent=HMPREF9448_RS05250;Dbxref=GeneID:77848368;Name=HMPREF9448_RS05250;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008861557.1;old_locus_tag=HMPREF9448_01069;product=hypothetical protein;protein_id=WP_008861557.1;transl_table=11;translation=length.643 NZ_JH815204 GenBank exon 5053 6984 . + 1 Parent=HMPREF9448_RS05250 NZ_JH815204 GenBank gene 7101 10847 . + 1 ID=HMPREF9448_RS05255;Dbxref=GeneID:77848369;Name=HMPREF9448_RS05255;old_locus_tag=HMPREF9448_01070 NZ_JH815204 GenBank mRNA 7101 10847 . + 1 ID=HMPREF9448_RS05255;Parent=HMPREF9448_RS05255 NZ_JH815204 GenBank CDS 7101 10847 . + 1 ID=HMPREF9448_RS05255;Parent=HMPREF9448_RS05255;Dbxref=GeneID:77848369;Name=HMPREF9448_RS05255;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007479649.1;old_locus_tag=HMPREF9448_01070;product=LamG-like jellyroll fold domain-containing protein;protein_id=WP_008861558.1;transl_table=11;translation=length.1248 NZ_JH815204 GenBank exon 7101 10847 . + 1 Parent=HMPREF9448_RS05255 NZ_JH815204 GenBank gene 10986 12656 . + 1 ID=HMPREF9448_RS05260;Dbxref=GeneID:77848370;Name=HMPREF9448_RS05260;old_locus_tag=HMPREF9448_01071 NZ_JH815204 GenBank mRNA 10986 12656 . + 1 ID=HMPREF9448_RS05260;Parent=HMPREF9448_RS05260 NZ_JH815204 GenBank CDS 10986 12656 . + 1 ID=HMPREF9448_RS05260;Parent=HMPREF9448_RS05260;Dbxref=GeneID:77848370;gO_component=GO:0005576 - extracellular region [Evidence IEA];Name=HMPREF9448_RS05260;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:TIGR04183.1;old_locus_tag=HMPREF9448_01071;product=T9SS type A sorting domain-containing protein;protein_id=WP_008861559.1;transl_table=11;translation=length.556 NZ_JH815204 GenBank exon 10986 12656 . + 1 Parent=HMPREF9448_RS05260