##gff-version 3 ##sequence-region NC_008228 1 65349 # conversion-by bp_genbank2gff3.pl # organism Paraglaciecola sp. T6c # Note Paraglaciecola sp. T6c, complete sequence. # date 23-JUL-2024 NC_008228 GenBank region 1 65349 . + 1 ID=NC_008228;Dbxref=BioProject:PRJNA224116,taxon:3042615;Name=NC_008228;Note=Paraglaciecola sp. T6c%2C complete sequence.,REFSEQ INFORMATION: The reference sequence is identical to CP000388.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000130 Source DNA and bacteria available from Anna C. Karls (akarls@uga.edu) Contacts: Anna C. Karls (akarls@uga.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Name :: GCF_000014225.1-RS_2024_07_23\nAnnotation Date :: 07/23/2024 01:17:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\nset,GeneMarkS-2+\nAnnotation Software revision :: 6.7\nFeatures Annotated :: Gene,CDS,rRNA,tRNA,ncRNA\nGenes (total) :: 4,452\nCDSs (total) :: 4,371\nGenes (coding) :: 4,332\nCDSs (with protein) :: 4,332\nGenes (RNA) :: 81\nrRNAs :: 5,5,5 (5S,16S,23S)\ncomplete rRNAs :: 5,5,5 (5S,16S,23S)\ntRNAs :: 62\nncRNAs :: 4\nPseudo Genes (total) :: 39\nCDSs (without protein) :: 39\nPseudo Genes (ambiguous residues) :: 0 of 39\nPseudo Genes (frameshifted) :: 15 of 39\nPseudo Genes (incomplete) :: 29 of 39\nPseudo Genes (internal stop) :: 12 of 39\nPseudo Genes (multiple problems) :: 13 of 39\n##Genome-Annotation-Data-END##;comment1=REFSEQ INFORMATION: The reference sequence is identical to CP000388.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4000130 Source DNA and bacteria available from Anna C. Karls (akarls@uga.edu) Contacts: Anna C. Karls (akarls@uga.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Name :: GCF_000014225.1-RS_2024_07_23\nAnnotation Date :: 07/23/2024 01:17:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\nset%3B GeneMarkS-2+\nAnnotation Software revision :: 6.7\nFeatures Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA\nGenes (total) :: 4%2C452\nCDSs (total) :: 4%2C371\nGenes (coding) :: 4%2C332\nCDSs (with protein) :: 4%2C332\nGenes (RNA) :: 81\nrRNAs :: 5%2C 5%2C 5 (5S%2C 16S%2C 23S)\ncomplete rRNAs :: 5%2C 5%2C 5 (5S%2C 16S%2C 23S)\ntRNAs :: 62\nncRNAs :: 4\nPseudo Genes (total) :: 39\nCDSs (without protein) :: 39\nPseudo Genes (ambiguous residues) :: 0 of 39\nPseudo Genes (frameshifted) :: 15 of 39\nPseudo Genes (incomplete) :: 29 of 39\nPseudo Genes (internal stop) :: 12 of 39\nPseudo Genes (multiple problems) :: 13 of 39\n##Genome-Annotation-Data-END##;date=23-JUL-2024;mol_type=genomic DNA;organism=Paraglaciecola sp. T6c;strain=T6c NC_008228 GenBank gene 1 378 . + 1 ID=PATL_RS09875;Name=PATL_RS09875;old_locus_tag=Patl_1937 NC_008228 GenBank mRNA 1 378 . + 1 ID=PATL_RS09875;Parent=PATL_RS09875 NC_008228 GenBank CDS 1 378 . + 1 ID=PATL_RS09875;Parent=PATL_RS09875;Name=PATL_RS09875;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006992571.1;old_locus_tag=Patl_1937;product=VOC family protein;protein_id=WP_011574751.1;transl_table=11;translation=length.125 NC_008228 GenBank exon 1 378 . + 1 Parent=PATL_RS09875 NC_008228 GenBank gene 1189 4104 . + 1 ID=PATL_RS09880;Name=PATL_RS09880;old_locus_tag=Patl_1938 NC_008228 GenBank mRNA 1189 4104 . + 1 ID=PATL_RS09880;Parent=PATL_RS09880 NC_008228 GenBank CDS 1189 4104 . + 1 ID=PATL_RS09880;Parent=PATL_RS09880;gO_component=GO:0019867 - outer membrane [Evidence IEA];gO_function=GO:0022857 - transmembrane transporter activity [Evidence IEA];gO_process=GO:0006810 - transport [Evidence IEA];Name=PATL_RS09880;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007103612.1;old_locus_tag=Patl_1938;product=TonB-dependent receptor;protein_id=WP_011574752.1;transl_table=11;translation=length.971 NC_008228 GenBank exon 1189 4104 . + 1 Parent=PATL_RS09880 NC_008228 GenBank gene 4299 5795 . + 1 ID=PATL_RS09885;Name=PATL_RS09885;old_locus_tag=Patl_1939 NC_008228 GenBank mRNA 4299 5795 . + 1 ID=PATL_RS09885;Parent=PATL_RS09885 NC_008228 GenBank CDS 4299 5795 . + 1 ID=PATL_RS09885;Parent=PATL_RS09885;eC_number=1.14.19.-;gO_function=GO:0000166 - nucleotide binding [Evidence IEA]%3B GO:0016491 - oxidoreductase activity [Evidence IEA];Name=PATL_RS09885;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007991346.1;old_locus_tag=Patl_1939;product=tryptophan halogenase family protein;protein_id=WP_041713642.1;transl_table=11;translation=length.498 NC_008228 GenBank exon 4299 5795 . + 1 Parent=PATL_RS09885 NC_008228 GenBank gene 6284 9316 . + 1 ID=PATL_RS09890;Name=PATL_RS09890;old_locus_tag=Patl_1940 NC_008228 GenBank mRNA 6284 9316 . + 1 ID=PATL_RS09890;Parent=PATL_RS09890 NC_008228 GenBank CDS 6284 9316 . + 1 ID=PATL_RS09890;Parent=PATL_RS09890;gO_component=GO:0019867 - outer membrane [Evidence IEA];gO_function=GO:0022857 - transmembrane transporter activity [Evidence IEA];gO_process=GO:0006810 - transport [Evidence IEA];Name=PATL_RS09890;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014998329.1;old_locus_tag=Patl_1940;product=TonB-dependent receptor;protein_id=WP_011574754.1;transl_table=11;translation=length.1010 NC_008228 GenBank exon 6284 9316 . + 1 Parent=PATL_RS09890 NC_008228 GenBank gene 9412 13764 . + 1 ID=PATL_RS09895;Name=PATL_RS09895;old_locus_tag=Patl_1941 NC_008228 GenBank mRNA 9412 13764 . + 1 ID=PATL_RS09895;Parent=PATL_RS09895 NC_008228 GenBank CDS 9412 13764 . + 1 ID=PATL_RS09895;Parent=PATL_RS09895;Name=PATL_RS09895;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013753860.1;old_locus_tag=Patl_1941;product=alpha-1%2C6-glucosidase domain-containing protein;protein_id=WP_011574755.1;transl_table=11;translation=length.1450 NC_008228 GenBank exon 9412 13764 . + 1 Parent=PATL_RS09895 NC_008228 GenBank gene 14683 15216 . + 1 ID=PATL_RS09905;Name=PATL_RS09905;old_locus_tag=Patl_1942 NC_008228 GenBank mRNA 14683 15216 . + 1 ID=PATL_RS09905;Parent=PATL_RS09905 NC_008228 GenBank CDS 14683 15216 . + 1 ID=PATL_RS09905;Parent=PATL_RS09905;Name=PATL_RS09905;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016957993.1;old_locus_tag=Patl_1942;product=hypothetical protein;protein_id=WP_011574756.1;transl_table=11;translation=length.177 NC_008228 GenBank exon 14683 15216 . + 1 Parent=PATL_RS09905 NC_008228 GenBank gene 15324 16532 . - 1 ID=PATL_RS09910;Name=PATL_RS09910;old_locus_tag=Patl_1943 NC_008228 GenBank mRNA 15324 16532 . - 1 ID=PATL_RS09910;Parent=PATL_RS09910 NC_008228 GenBank CDS 15324 16532 . - 1 ID=PATL_RS09910;Parent=PATL_RS09910;gO_function=GO:0004803 - transposase activity [Evidence IEA];gO_process=GO:0006313 - DNA transposition [Evidence IEA];Name=PATL_RS09910;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011573751.1;old_locus_tag=Patl_1943;product=IS4-like element ISPat1 family transposase;protein_id=WP_041714380.1;transl_table=11;translation=length.402 NC_008228 GenBank exon 15324 16532 . - 1 Parent=PATL_RS09910 NC_008228 GenBank gene 16672 17091 . + 1 ID=PATL_RS09915;Name=PATL_RS09915;old_locus_tag=Patl_1944 NC_008228 GenBank mRNA 16672 17091 . + 1 ID=PATL_RS09915;Parent=PATL_RS09915 NC_008228 GenBank CDS 16672 17091 . + 1 ID=PATL_RS09915;Parent=PATL_RS09915;Name=PATL_RS09915;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=Patl_1944;product=hypothetical protein;protein_id=WP_157043407.1;transl_table=11;translation=length.139 NC_008228 GenBank exon 16672 17091 . + 1 Parent=PATL_RS09915 NC_008228 GenBank gene 17207 18415 . - 1 ID=PATL_RS09920;Name=PATL_RS09920;old_locus_tag=Patl_1945 NC_008228 GenBank mRNA 17207 18415 . - 1 ID=PATL_RS09920;Parent=PATL_RS09920 NC_008228 GenBank CDS 17207 18415 . - 1 ID=PATL_RS09920;Parent=PATL_RS09920;gO_function=GO:0004803 - transposase activity [Evidence IEA];gO_process=GO:0006313 - DNA transposition [Evidence IEA];Name=PATL_RS09920;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011573751.1;old_locus_tag=Patl_1945;product=IS4-like element ISPat1 family transposase;protein_id=WP_041714381.1;transl_table=11;translation=length.402 NC_008228 GenBank exon 17207 18415 . - 1 Parent=PATL_RS09920 NC_008228 GenBank gene 18898 19350 . + 1 ID=PATL_RS09930;Name=PATL_RS09930;old_locus_tag=Patl_1947 NC_008228 GenBank mRNA 18898 19350 . + 1 ID=PATL_RS09930;Parent=PATL_RS09930 NC_008228 GenBank CDS 18898 19350 . + 1 ID=PATL_RS09930;Parent=PATL_RS09930;Name=PATL_RS09930;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=Patl_1947;product=hypothetical protein;protein_id=WP_011574761.1;transl_table=11;translation=length.150 NC_008228 GenBank exon 18898 19350 . + 1 Parent=PATL_RS09930 NC_008228 GenBank gene 19482 20465 . - 1 ID=PATL_RS09935;Name=PATL_RS09935;old_locus_tag=Patl_1948 NC_008228 GenBank mRNA 19482 20465 . - 1 ID=PATL_RS09935;Parent=PATL_RS09935 NC_008228 GenBank CDS 19482 20465 . - 1 ID=PATL_RS09935;Parent=PATL_RS09935;Name=PATL_RS09935;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007991258.1;old_locus_tag=Patl_1948;product=hypothetical protein;protein_id=WP_011574762.1;transl_table=11;translation=length.327 NC_008228 GenBank exon 19482 20465 . - 1 Parent=PATL_RS09935 NC_008228 GenBank pseudogenic_exon 20556 21128 . - 1 ID=PATL_RS09940;gO_function=GO:0004803 - transposase activity [Evidence IEA];gO_process=GO:0006313 - DNA transposition [Evidence IEA];Name=PATL_RS09940;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011573751.1;old_locus_tag=Patl_1949;product=IS4-like element ISPat1 family transposase;pseudo=_no_value;transl_table=11 NC_008228 GenBank pseudogene 20556 21128 . - 1 ID=PATL_RS09940.pseudogene;Alias=PATL_RS09940;Name=PATL_RS09940;old_locus_tag=Patl_1949;pseudo=_no_value NC_008228 GenBank gene 21295 21813 . + 1 ID=PATL_RS09945;Name=PATL_RS09945 NC_008228 GenBank mRNA 21295 21813 . + 1 ID=PATL_RS09945;Parent=PATL_RS09945 NC_008228 GenBank CDS 21295 21813 . + 1 ID=PATL_RS09945;Parent=PATL_RS09945;Name=PATL_RS09945;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=WP_041713649.1;transl_table=11;translation=length.172 NC_008228 GenBank exon 21295 21813 . + 1 Parent=PATL_RS09945 NC_008228 GenBank gene 21836 22792 . - 1 ID=PATL_RS09950;Name=PATL_RS09950;old_locus_tag=Patl_1950 NC_008228 GenBank mRNA 21836 22792 . - 1 ID=PATL_RS09950;Parent=PATL_RS09950 NC_008228 GenBank CDS 21836 22792 . - 1 ID=PATL_RS09950;Parent=PATL_RS09950;gO_function=GO:0004803 - transposase activity [Evidence IEA];gO_process=GO:0006313 - DNA transposition [Evidence IEA];Name=PATL_RS09950;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558132.1;old_locus_tag=Patl_1950;product=IS110-like element IS492 family transposase;protein_id=WP_011573729.1;transl_table=11;translation=length.318 NC_008228 GenBank exon 21836 22792 . - 1 Parent=PATL_RS09950 NC_008228 GenBank gene 23132 23476 . + 1 ID=PATL_RS09955;Name=PATL_RS09955 NC_008228 GenBank mRNA 23132 23476 . + 1 ID=PATL_RS09955;Parent=PATL_RS09955 NC_008228 GenBank CDS 23132 23476 . + 1 ID=PATL_RS09955;Parent=PATL_RS09955;Name=PATL_RS09955;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=WP_041713651.1;transl_table=11;translation=length.114 NC_008228 GenBank exon 23132 23476 . + 1 Parent=PATL_RS09955 NC_008228 GenBank gene 23574 24089 . + 1 ID=PATL_RS09960;Name=PATL_RS09960;old_locus_tag=Patl_1951 NC_008228 GenBank mRNA 23574 24089 . + 1 ID=PATL_RS09960;Parent=PATL_RS09960 NC_008228 GenBank CDS 23574 24089 . + 1 ID=PATL_RS09960;Parent=PATL_RS09960;Name=PATL_RS09960;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=Patl_1951;product=hypothetical protein;protein_id=WP_041713653.1;transl_table=11;translation=length.171 NC_008228 GenBank exon 23574 24089 . + 1 Parent=PATL_RS09960 NC_008228 GenBank gene 24190 24693 . + 1 ID=PATL_RS09965;Name=PATL_RS09965;old_locus_tag=Patl_1952 NC_008228 GenBank mRNA 24190 24693 . + 1 ID=PATL_RS09965;Parent=PATL_RS09965 NC_008228 GenBank CDS 24190 24693 . + 1 ID=PATL_RS09965;Parent=PATL_RS09965;Name=PATL_RS09965;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=Patl_1952;product=hypothetical protein;protein_id=WP_041713655.1;transl_table=11;translation=length.167 NC_008228 GenBank exon 24190 24693 . + 1 Parent=PATL_RS09965 NC_008228 GenBank pseudogenic_exon 24786 24971 . - 1 ID=PATL_RS22810;Name=PATL_RS22810;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017444812.1;product=group II intron reverse transcriptase/maturase;pseudo=_no_value;transl_table=11 NC_008228 GenBank pseudogene 24786 24971 . - 1 ID=PATL_RS22810.pseudogene;Alias=PATL_RS22810;Name=PATL_RS22810;pseudo=_no_value NC_008228 GenBank gene 25530 26087 . + 1 ID=PATL_RS09970;Name=PATL_RS09970;old_locus_tag=Patl_1953 NC_008228 GenBank mRNA 25530 26087 . + 1 ID=PATL_RS09970;Parent=PATL_RS09970 NC_008228 GenBank CDS 25530 26087 . + 1 ID=PATL_RS09970;Parent=PATL_RS09970;Name=PATL_RS09970;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008306174.1;old_locus_tag=Patl_1953;product=hypothetical protein;protein_id=WP_011574766.1;transl_table=11;translation=length.185 NC_008228 GenBank exon 25530 26087 . + 1 Parent=PATL_RS09970 NC_008228 GenBank gene 26192 26530 . - 1 ID=PATL_RS09975;Name=PATL_RS09975;old_locus_tag=Patl_1954 NC_008228 GenBank mRNA 26192 26530 . - 1 ID=PATL_RS09975;Parent=PATL_RS09975 NC_008228 GenBank CDS 26192 26530 . - 1 ID=PATL_RS09975;Parent=PATL_RS09975;Name=PATL_RS09975;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013753858.1;old_locus_tag=Patl_1954;product=YggL family protein;protein_id=WP_011574767.1;transl_table=11;translation=length.112 NC_008228 GenBank exon 26192 26530 . - 1 Parent=PATL_RS09975 NC_008228 GenBank gene 26887 27045 . + 1 ID=PATL_RS22450;Name=PATL_RS22450;old_locus_tag=Patl_1955 NC_008228 GenBank mRNA 26887 27045 . + 1 ID=PATL_RS22450;Parent=PATL_RS22450 NC_008228 GenBank CDS 26887 27045 . + 1 ID=PATL_RS22450;Parent=PATL_RS22450;Name=PATL_RS22450;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006992920.1;old_locus_tag=Patl_1955;product=DUF2986 domain-containing protein;protein_id=WP_011574768.1;transl_table=11;translation=length.52 NC_008228 GenBank exon 26887 27045 . + 1 Parent=PATL_RS22450 NC_008228 GenBank gene 27148 27543 . + 1 ID=PATL_RS09980;Name=PATL_RS09980;old_locus_tag=Patl_1956 NC_008228 GenBank mRNA 27148 27543 . + 1 ID=PATL_RS09980;Parent=PATL_RS09980 NC_008228 GenBank CDS 27148 27543 . + 1 ID=PATL_RS09980;Parent=PATL_RS09980;Name=PATL_RS09980;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019028333.1;old_locus_tag=Patl_1956;product=DUF3465 domain-containing protein;protein_id=WP_011574769.1;transl_table=11;translation=length.131 NC_008228 GenBank exon 27148 27543 . + 1 Parent=PATL_RS09980 NC_008228 GenBank gene 27688 28959 . - 1 ID=PATL_RS09985;Name=PATL_RS09985;old_locus_tag=Patl_1957 NC_008228 GenBank mRNA 27688 28959 . - 1 ID=PATL_RS09985;Parent=PATL_RS09985 NC_008228 GenBank CDS 27688 28959 . - 1 ID=PATL_RS09985;Parent=PATL_RS09985;eC_number=1.-.-.-;Name=PATL_RS09985;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006992919.1;old_locus_tag=Patl_1957;product=flavin monoamine oxidase family protein;protein_id=WP_011574770.1;transl_table=11;translation=length.423 NC_008228 GenBank exon 27688 28959 . - 1 Parent=PATL_RS09985 NC_008228 GenBank gene 29163 29783 . + 1 ID=PATL_RS09990;Name=PATL_RS09990;old_locus_tag=Patl_1958 NC_008228 GenBank mRNA 29163 29783 . + 1 ID=PATL_RS09990;Parent=PATL_RS09990 NC_008228 GenBank CDS 29163 29783 . + 1 ID=PATL_RS09990;Parent=PATL_RS09990;Name=PATL_RS09990;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006992915.1;old_locus_tag=Patl_1958;product=cytochrome c oxidase assembly factor Coa1 family protein;protein_id=WP_011574771.1;transl_table=11;translation=length.206 NC_008228 GenBank exon 29163 29783 . + 1 Parent=PATL_RS09990 NC_008228 GenBank gene 30032 30814 . - 1 ID=PATL_RS09995;Name=PATL_RS09995;old_locus_tag=Patl_1959 NC_008228 GenBank mRNA 30032 30814 . - 1 ID=PATL_RS09995;Parent=PATL_RS09995 NC_008228 GenBank CDS 30032 30814 . - 1 ID=PATL_RS09995;Parent=PATL_RS09995;Name=PATL_RS09995;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006992914.1;old_locus_tag=Patl_1959;product=zinc ribbon-containing protein;protein_id=WP_011574772.1;transl_table=11;translation=length.260 NC_008228 GenBank exon 30032 30814 . - 1 Parent=PATL_RS09995 NC_008228 GenBank gene 30977 31747 . - 1 ID=PATL_RS10000;Name=PATL_RS10000;old_locus_tag=Patl_1960 NC_008228 GenBank mRNA 30977 31747 . - 1 ID=PATL_RS10000;Parent=PATL_RS10000 NC_008228 GenBank CDS 30977 31747 . - 1 ID=PATL_RS10000;Parent=PATL_RS10000;gO_function=GO:0003677 - DNA binding [Evidence IEA]%3B GO:0003700 - DNA-binding transcription factor activity [Evidence IEA];gO_process=GO:0006355 - regulation of DNA-templated transcription [Evidence IEA];Name=PATL_RS10000;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013753894.1;old_locus_tag=Patl_1960;product=IclR family transcriptional regulator;protein_id=WP_011574773.1;transl_table=11;translation=length.256 NC_008228 GenBank exon 30977 31747 . - 1 Parent=PATL_RS10000 NC_008228 GenBank gene 31950 32732 . + 1 ID=PATL_RS10005;Name=PATL_RS10005;old_locus_tag=Patl_1961 NC_008228 GenBank mRNA 31950 32732 . + 1 ID=PATL_RS10005;Parent=PATL_RS10005 NC_008228 GenBank CDS 31950 32732 . + 1 ID=PATL_RS10005;Parent=PATL_RS10005;eC_number=1.14.-.-;Name=PATL_RS10005;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013753893.1;old_locus_tag=Patl_1961;product=phytanoyl-CoA dioxygenase family protein;protein_id=WP_011574774.1;transl_table=11;translation=length.260 NC_008228 GenBank exon 31950 32732 . + 1 Parent=PATL_RS10005 NC_008228 GenBank gene 32733 33860 . + 1 ID=PATL_RS10010;Name=PATL_RS10010;old_locus_tag=Patl_1962 NC_008228 GenBank mRNA 32733 33860 . + 1 ID=PATL_RS10010;Parent=PATL_RS10010 NC_008228 GenBank CDS 32733 33860 . + 1 ID=PATL_RS10010;Parent=PATL_RS10010;Name=PATL_RS10010;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008306117.1;old_locus_tag=Patl_1962;product=type I secretion protein TolC;protein_id=WP_011574775.1;transl_table=11;translation=length.375 NC_008228 GenBank exon 32733 33860 . + 1 Parent=PATL_RS10010 NC_008228 GenBank gene 34121 34858 . - 1 ID=PATL_RS10015;Name=PATL_RS10015;old_locus_tag=Patl_1963 NC_008228 GenBank mRNA 34121 34858 . - 1 ID=PATL_RS10015;Parent=PATL_RS10015 NC_008228 GenBank CDS 34121 34858 . - 1 ID=PATL_RS10015;Parent=PATL_RS10015;Name=PATL_RS10015;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013753890.1;old_locus_tag=Patl_1963;product=SapC family protein;protein_id=WP_011574776.1;transl_table=11;translation=length.245 NC_008228 GenBank exon 34121 34858 . - 1 Parent=PATL_RS10015 NC_008228 GenBank gene 34911 36506 . - 1 ID=PATL_RS10020;Name=PATL_RS10020;old_locus_tag=Patl_1964 NC_008228 GenBank mRNA 34911 36506 . - 1 ID=PATL_RS10020;Parent=PATL_RS10020 NC_008228 GenBank CDS 34911 36506 . - 1 ID=PATL_RS10020;Parent=PATL_RS10020;eC_number=1.14.19.-;gO_function=GO:0000166 - nucleotide binding [Evidence IEA]%3B GO:0016491 - oxidoreductase activity [Evidence IEA];Name=PATL_RS10020;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007106361.1;old_locus_tag=Patl_1964;product=tryptophan halogenase family protein;protein_id=WP_011574777.1;transl_table=11;translation=length.531 NC_008228 GenBank exon 34911 36506 . - 1 Parent=PATL_RS10020 NC_008228 GenBank gene 36654 38789 . - 1 ID=PATL_RS10025;Name=PATL_RS10025;old_locus_tag=Patl_1965 NC_008228 GenBank mRNA 36654 38789 . - 1 ID=PATL_RS10025;Parent=PATL_RS10025 NC_008228 GenBank CDS 36654 38789 . - 1 ID=PATL_RS10025;Parent=PATL_RS10025;Name=PATL_RS10025;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007991419.1;old_locus_tag=Patl_1965;product=hypothetical protein;protein_id=WP_011574778.1;transl_table=11;translation=length.711 NC_008228 GenBank exon 36654 38789 . - 1 Parent=PATL_RS10025 NC_008228 GenBank gene 38863 42525 . - 1 ID=PATL_RS10030;Name=PATL_RS10030;old_locus_tag=Patl_1966 NC_008228 GenBank mRNA 38863 42525 . - 1 ID=PATL_RS10030;Parent=PATL_RS10030 NC_008228 GenBank CDS 38863 42525 . - 1 ID=PATL_RS10030;Parent=PATL_RS10030;gO_component=GO:0019867 - outer membrane [Evidence IEA];gO_function=GO:0022857 - transmembrane transporter activity [Evidence IEA];gO_process=GO:0006810 - transport [Evidence IEA];Name=PATL_RS10030;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007991417.1;old_locus_tag=Patl_1966;product=TonB-dependent receptor;protein_id=WP_041714384.1;transl_table=11;translation=length.1220 NC_008228 GenBank exon 38863 42525 . - 1 Parent=PATL_RS10030 NC_008228 GenBank gene 43463 43732 . - 1 ID=PATL_RS10035;Name=PATL_RS10035;old_locus_tag=Patl_1967 NC_008228 GenBank mRNA 43463 43732 . - 1 ID=PATL_RS10035;Parent=PATL_RS10035 NC_008228 GenBank CDS 43463 43732 . - 1 ID=PATL_RS10035;Parent=PATL_RS10035;gO_function=GO:0003677 - DNA binding [Evidence IEA];Name=PATL_RS10035;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006992911.1;old_locus_tag=Patl_1967;product=helix-turn-helix domain-containing protein;protein_id=WP_011574780.1;transl_table=11;translation=length.89 NC_008228 GenBank exon 43463 43732 . - 1 Parent=PATL_RS10035 NC_008228 GenBank gene 43847 44932 . - 1 ID=PATL_RS10040;Name=PATL_RS10040;old_locus_tag=Patl_1968 NC_008228 GenBank mRNA 43847 44932 . - 1 ID=PATL_RS10040;Parent=PATL_RS10040 NC_008228 GenBank CDS 43847 44932 . - 1 ID=PATL_RS10040;Parent=PATL_RS10040;eC_number=3.2.1.-;Name=PATL_RS10040;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007991409.1;old_locus_tag=Patl_1968;product=glycoside hydrolase family 117 protein;protein_id=WP_011574781.1;transl_table=11;translation=length.361 NC_008228 GenBank exon 43847 44932 . - 1 Parent=PATL_RS10040 NC_008228 GenBank gene 44971 45927 . - 1 ID=PATL_RS10045;Name=PATL_RS10045;old_locus_tag=Patl_1969 NC_008228 GenBank mRNA 44971 45927 . - 1 ID=PATL_RS10045;Parent=PATL_RS10045 NC_008228 GenBank CDS 44971 45927 . - 1 ID=PATL_RS10045;Parent=PATL_RS10045;eC_number=2.7.1.-;gO_component=GO:0005829 - cytosol [Evidence IEA];gO_function=GO:0019200 - carbohydrate kinase activity [Evidence IEA];gO_process=GO:0005975 - carbohydrate metabolic process [Evidence IEA];Name=PATL_RS10045;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008306130.1;old_locus_tag=Patl_1969;product=sugar kinase;protein_id=WP_011574782.1;transl_table=11;translation=length.318 NC_008228 GenBank exon 44971 45927 . - 1 Parent=PATL_RS10045 NC_008228 GenBank gene 45929 47518 . - 1 ID=PATL_RS10050;Name=PATL_RS10050;old_locus_tag=Patl_1970 NC_008228 GenBank mRNA 45929 47518 . - 1 ID=PATL_RS10050;Parent=PATL_RS10050 NC_008228 GenBank CDS 45929 47518 . - 1 ID=PATL_RS10050;Parent=PATL_RS10050;gO_component=GO:0016020 - membrane [Evidence IEA];gO_function=GO:0051119 - sugar transmembrane transporter activity [Evidence IEA];gO_process=GO:0008643 - carbohydrate transport [Evidence IEA];Name=PATL_RS10050;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007991405.1;old_locus_tag=Patl_1970;product=sugar porter family MFS transporter;protein_id=WP_011574783.1;transl_table=11;translation=length.529 NC_008228 GenBank exon 45929 47518 . - 1 Parent=PATL_RS10050 NC_008228 GenBank gene 47990 50371 . + 1 ID=PATL_RS10055;Name=PATL_RS10055;old_locus_tag=Patl_1971 NC_008228 GenBank mRNA 47990 50371 . + 1 ID=PATL_RS10055;Parent=PATL_RS10055 NC_008228 GenBank CDS 47990 50371 . + 1 ID=PATL_RS10055;Parent=PATL_RS10055;eC_number=3.2.1.23;gO_component=GO:0009341 - beta-galactosidase complex [Evidence IEA];gO_function=GO:0004565 - beta-galactosidase activity [Evidence IEA];gO_process=GO:0005975 - carbohydrate metabolic process [Evidence IEA];Name=PATL_RS10055;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007991403.1;old_locus_tag=Patl_1971;product=beta-galactosidase;protein_id=WP_011574784.1;transl_table=11;translation=length.793 NC_008228 GenBank exon 47990 50371 . + 1 Parent=PATL_RS10055 NC_008228 GenBank gene 50736 51269 . + 1 ID=PATL_RS23040;Name=PATL_RS23040;old_locus_tag=Patl_1972 NC_008228 GenBank mRNA 50736 51269 . + 1 ID=PATL_RS23040;Parent=PATL_RS23040 NC_008228 GenBank CDS 50736 51269 . + 1 ID=PATL_RS23040;Parent=PATL_RS23040;Name=PATL_RS23040;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019027991.1;old_locus_tag=Patl_1972;product=prepilin-type N-terminal cleavage/methylation domain-containing protein;protein_id=WP_011574785.1;transl_table=11;translation=length.177 NC_008228 GenBank exon 50736 51269 . + 1 Parent=PATL_RS23040 NC_008228 GenBank gene 51496 52686 . + 1 ID=PATL_RS10065;Name=PATL_RS10065;old_locus_tag=Patl_1973 NC_008228 GenBank mRNA 51496 52686 . + 1 ID=PATL_RS10065;Parent=PATL_RS10065 NC_008228 GenBank CDS 51496 52686 . + 1 ID=PATL_RS10065;Parent=PATL_RS10065;gO_function=GO:0005524 - ATP binding [Evidence IEA]%3B GO:0005515 - protein binding [Evidence IEA]%3B GO:0004672 - protein kinase activity [Evidence IEA];gO_process=GO:0006468 - protein phosphorylation [Evidence IEA];Name=PATL_RS10065;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006992906.1;old_locus_tag=Patl_1973;product=leucine-rich repeat-containing protein kinase family protein;protein_id=WP_041713658.1;transl_table=11;translation=length.396 NC_008228 GenBank exon 51496 52686 . + 1 Parent=PATL_RS10065 NC_008228 GenBank gene 52713 52883 . - 1 ID=PATL_RS22815;Name=PATL_RS22815;old_locus_tag=Patl_1974 NC_008228 GenBank mRNA 52713 52883 . - 1 ID=PATL_RS22815;Parent=PATL_RS22815 NC_008228 GenBank CDS 52713 52883 . - 1 ID=PATL_RS22815;Parent=PATL_RS22815;Name=PATL_RS22815;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011574787.1;old_locus_tag=Patl_1974;product=hypothetical protein;protein_id=WP_011574787.1;transl_table=11;translation=length.56 NC_008228 GenBank exon 52713 52883 . - 1 Parent=PATL_RS22815 NC_008228 GenBank gene 53112 55373 . + 1 ID=PATL_RS10070;Name=katG;locus_tag=PATL_RS10070;old_locus_tag=Patl_1975 NC_008228 GenBank mRNA 53112 55373 . + 1 ID=PATL_RS10070;Parent=PATL_RS10070 NC_008228 GenBank CDS 53112 55373 . + 1 ID=PATL_RS10070;Parent=PATL_RS10070;eC_number=1.11.1.21;gO_function=GO:0004096 - catalase activity [Evidence IEA]%3B GO:0020037 - heme binding [Evidence IEA]%3B GO:0004601 - peroxidase activity [Evidence IEA];gO_process=GO:0006979 - response to oxidative stress [Evidence IEA];Name=katG;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011574788.1;locus_tag=PATL_RS10070;old_locus_tag=Patl_1975;product=catalase/peroxidase HPI;protein_id=WP_011574788.1;transl_table=11;translation=length.753 NC_008228 GenBank exon 53112 55373 . + 1 Parent=PATL_RS10070 NC_008228 GenBank gene 55498 56283 . - 1 ID=PATL_RS10075;Name=PATL_RS10075;old_locus_tag=Patl_1976 NC_008228 GenBank mRNA 55498 56283 . - 1 ID=PATL_RS10075;Parent=PATL_RS10075 NC_008228 GenBank CDS 55498 56283 . - 1 ID=PATL_RS10075;Parent=PATL_RS10075;eC_number=1.1.1.30;gO_function=GO:0003858 - 3-hydroxybutyrate dehydrogenase activity [Evidence IEA];Name=PATL_RS10075;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006992904.1;old_locus_tag=Patl_1976;product=3-hydroxybutyrate dehydrogenase;protein_id=WP_011574789.1;transl_table=11;translation=length.261 NC_008228 GenBank exon 55498 56283 . - 1 Parent=PATL_RS10075 NC_008228 GenBank gene 56280 57389 . - 1 ID=PATL_RS10080;Name=PATL_RS10080;old_locus_tag=Patl_1977 NC_008228 GenBank mRNA 56280 57389 . - 1 ID=PATL_RS10080;Parent=PATL_RS10080 NC_008228 GenBank CDS 56280 57389 . - 1 ID=PATL_RS10080;Parent=PATL_RS10080;gO_component=GO:0005576 - extracellular region [Evidence IEA];gO_function=GO:0016787 - hydrolase activity [Evidence IEA];Name=PATL_RS10080;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007991308.1;old_locus_tag=Patl_1977;product=PHB depolymerase family esterase;protein_id=WP_011574790.1;transl_table=11;translation=length.369 NC_008228 GenBank exon 56280 57389 . - 1 Parent=PATL_RS10080 NC_008228 GenBank gene 57416 58618 . - 1 ID=PATL_RS10085;Name=PATL_RS10085;old_locus_tag=Patl_1978 NC_008228 GenBank mRNA 57416 58618 . - 1 ID=PATL_RS10085;Parent=PATL_RS10085 NC_008228 GenBank CDS 57416 58618 . - 1 ID=PATL_RS10085;Parent=PATL_RS10085;eC_number=2.3.1.31;gO_function=GO:0016747 - acyltransferase activity%2C transferring groups other than amino-acyl groups [Evidence IEA];gO_process=GO:0009058 - biosynthetic process [Evidence IEA];Name=PATL_RS10085;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006992902.1;old_locus_tag=Patl_1978;product=E22 family MetX-like putative esterase;protein_id=WP_011574791.1;transl_table=11;translation=length.400 NC_008228 GenBank exon 57416 58618 . - 1 Parent=PATL_RS10085 NC_008228 GenBank gene 58650 59945 . - 1 ID=PATL_RS10090;Name=PATL_RS10090;old_locus_tag=Patl_1979 NC_008228 GenBank mRNA 58650 59945 . - 1 ID=PATL_RS10090;Parent=PATL_RS10090 NC_008228 GenBank CDS 58650 59945 . - 1 ID=PATL_RS10090;Parent=PATL_RS10090;gO_function=GO:0022857 - transmembrane transporter activity [Evidence IEA];gO_process=GO:0055085 - transmembrane transport [Evidence IEA];Name=PATL_RS10090;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007104532.1;old_locus_tag=Patl_1979;product=GntP family permease;protein_id=WP_011574792.1;transl_table=11;translation=length.431 NC_008228 GenBank exon 58650 59945 . - 1 Parent=PATL_RS10090 NC_008228 GenBank gene 60139 62463 . + 1 ID=PATL_RS10095;Name=PATL_RS10095;old_locus_tag=Patl_1980 NC_008228 GenBank mRNA 60139 62463 . + 1 ID=PATL_RS10095;Parent=PATL_RS10095 NC_008228 GenBank CDS 60139 62463 . + 1 ID=PATL_RS10095;Parent=PATL_RS10095;gO_component=GO:0009279 - cell outer membrane [Evidence IEA]%3B GO:0016020 - membrane [Evidence IEA];Name=PATL_RS10095;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007991303.1;old_locus_tag=Patl_1980;product=TonB-dependent receptor;protein_id=WP_011574793.1;transl_table=11;translation=length.774 NC_008228 GenBank exon 60139 62463 . + 1 Parent=PATL_RS10095 NC_008228 GenBank gene 62773 63414 . + 1 ID=PATL_RS10105;Name=PATL_RS10105;old_locus_tag=Patl_1981 NC_008228 GenBank mRNA 62773 63414 . + 1 ID=PATL_RS10105;Parent=PATL_RS10105 NC_008228 GenBank CDS 62773 63414 . + 1 ID=PATL_RS10105;Parent=PATL_RS10105;gO_process=GO:0000160 - phosphorelay signal transduction system [Evidence IEA];Name=PATL_RS10105;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011574794.1;old_locus_tag=Patl_1981;product=response regulator;protein_id=WP_011574794.1;transl_table=11;translation=length.213 NC_008228 GenBank exon 62773 63414 . + 1 Parent=PATL_RS10105 NC_008228 GenBank gene 63490 65349 . - 1 ID=PATL_RS10110;Name=PATL_RS10110;old_locus_tag=Patl_1982 NC_008228 GenBank mRNA 63490 65349 . - 1 ID=PATL_RS10110;Parent=PATL_RS10110 NC_008228 GenBank CDS 63490 65349 . - 1 ID=PATL_RS10110;Parent=PATL_RS10110;gO_component=GO:0016020 - membrane [Evidence IEA]%3B GO:0005886 - plasma membrane [Evidence IEA];gO_process=GO:0006814 - sodium ion transport [Evidence IEA];Name=PATL_RS10110;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006992898.1;old_locus_tag=Patl_1982;product=cation:proton antiporter;protein_id=WP_011574795.1;transl_table=11;translation=length.619 NC_008228 GenBank exon 63490 65349 . - 1 Parent=PATL_RS10110