##gff-version 3
##sequence-region NC_009441 1 21286
# conversion-by bp_genbank2gff3.pl
# organism Flavobacterium johnsoniae UW101
# Note Flavobacterium johnsoniae UW101, complete sequence.
# date 04-APR-2020
NC_009441	GenBank	region	1	21286	.	+	1	ID=NC_009441;Dbxref=BioProject:PRJNA224116,ATCC:17061,taxon:376686;Name=NC_009441;Note=Flavobacterium johnsoniae UW101%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 5,234 CDSs (total) :: 5,151 Genes (coding) :: 5,091 CDSs (with protein) :: 5,091 Genes (RNA) :: 83 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 5%2C234 CDSs (total) :: 5%2C151 Genes (coding) :: 5%2C091 CDSs (with protein) :: 5%2C091 Genes (RNA) :: 83 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Flavobacterium johnsoniae UW101;strain=UW101%3B ATCC 17061;type_material=type strain of Flavobacterium johnsoniae
NC_009441	GenBank	gene	1	2046	.	-	1	ID=FJOH_RS22895;Dbxref=GeneID:31767353;Name=FJOH_RS22895;old_locus_tag=Fjoh_4428
NC_009441	GenBank	mRNA	1	2046	.	-	1	ID=FJOH_RS22895;Parent=FJOH_RS22895
NC_009441	GenBank	CDS	1	2046	.	-	1	ID=FJOH_RS22895;Parent=FJOH_RS22895;Dbxref=GeneID:31767353;Name=FJOH_RS22895;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020535877.1;old_locus_tag=Fjoh_4428;product=glycoside hydrolase family 65 protein;protein_id=WP_044048041.1;transl_table=11;translation=length.681
NC_009441	GenBank	exon	1	2046	.	-	1	Parent=FJOH_RS22895
NC_009441	GenBank	gene	2168	4291	.	-	1	ID=FJOH_RS22900;Dbxref=GeneID:31767354;Name=FJOH_RS22900;old_locus_tag=Fjoh_4429
NC_009441	GenBank	mRNA	2168	4291	.	-	1	ID=FJOH_RS22900;Parent=FJOH_RS22900
NC_009441	GenBank	CDS	2168	4291	.	-	1	ID=FJOH_RS22900;Parent=FJOH_RS22900;Dbxref=GeneID:31767354;Name=FJOH_RS22900;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007804680.1;old_locus_tag=Fjoh_4429;product=glycoside hydrolase family 97 protein;protein_id=WP_012026399.1;transl_table=11;translation=length.707
NC_009441	GenBank	exon	2168	4291	.	-	1	Parent=FJOH_RS22900
NC_009441	GenBank	gene	4309	6819	.	-	1	ID=FJOH_RS22905;Dbxref=GeneID:31767355;Name=FJOH_RS22905;old_locus_tag=Fjoh_4430
NC_009441	GenBank	mRNA	4309	6819	.	-	1	ID=FJOH_RS22905;Parent=FJOH_RS22905
NC_009441	GenBank	CDS	4309	6819	.	-	1	ID=FJOH_RS22905;Parent=FJOH_RS22905;Dbxref=GeneID:31767355;Name=FJOH_RS22905;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007218589.1;old_locus_tag=Fjoh_4430;product=DUF4968 domain-containing protein;protein_id=WP_012026400.1;transl_table=11;translation=length.836
NC_009441	GenBank	exon	4309	6819	.	-	1	Parent=FJOH_RS22905
NC_009441	GenBank	gene	6954	8693	.	-	1	ID=FJOH_RS22910;Dbxref=GeneID:31767356;Name=FJOH_RS22910;old_locus_tag=Fjoh_4431
NC_009441	GenBank	mRNA	6954	8693	.	-	1	ID=FJOH_RS22910;Parent=FJOH_RS22910
NC_009441	GenBank	CDS	6954	8693	.	-	1	ID=FJOH_RS22910;Parent=FJOH_RS22910;Dbxref=GeneID:31767356;Name=FJOH_RS22910;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018074749.1;old_locus_tag=Fjoh_4431;product=cycloisomaltooligosaccharide glucanotransferase;protein_id=WP_123875720.1;transl_table=11;translation=length.579
NC_009441	GenBank	exon	6954	8693	.	-	1	Parent=FJOH_RS22910
NC_009441	GenBank	gene	8717	10180	.	-	1	ID=FJOH_RS22915;Dbxref=GeneID:31767357;Name=FJOH_RS22915;old_locus_tag=Fjoh_4432
NC_009441	GenBank	mRNA	8717	10180	.	-	1	ID=FJOH_RS22915;Parent=FJOH_RS22915
NC_009441	GenBank	CDS	8717	10180	.	-	1	ID=FJOH_RS22915;Parent=FJOH_RS22915;Dbxref=GeneID:31767357;Name=FJOH_RS22915;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF025650.1%2CHMM:NF027726.1;old_locus_tag=Fjoh_4432;product=SusF/SusE family outer membrane protein;protein_id=WP_012026402.1;transl_table=11;translation=length.487
NC_009441	GenBank	exon	8717	10180	.	-	1	Parent=FJOH_RS22915
NC_009441	GenBank	gene	10193	11671	.	-	1	ID=FJOH_RS22920;Dbxref=GeneID:31767358;Name=FJOH_RS22920;old_locus_tag=Fjoh_4433
NC_009441	GenBank	mRNA	10193	11671	.	-	1	ID=FJOH_RS22920;Parent=FJOH_RS22920
NC_009441	GenBank	CDS	10193	11671	.	-	1	ID=FJOH_RS22920;Parent=FJOH_RS22920;Dbxref=GeneID:31767358;Name=FJOH_RS22920;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015782156.1;old_locus_tag=Fjoh_4433;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_044048550.1;transl_table=11;translation=length.492
NC_009441	GenBank	exon	10193	11671	.	-	1	Parent=FJOH_RS22920
NC_009441	GenBank	gene	11682	14753	.	-	1	ID=FJOH_RS22925;Dbxref=GeneID:31767359;Name=FJOH_RS22925;old_locus_tag=Fjoh_4434
NC_009441	GenBank	mRNA	11682	14753	.	-	1	ID=FJOH_RS22925;Parent=FJOH_RS22925
NC_009441	GenBank	CDS	11682	14753	.	-	1	ID=FJOH_RS22925;Parent=FJOH_RS22925;Dbxref=GeneID:31767359;Name=FJOH_RS22925;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007762542.1;old_locus_tag=Fjoh_4434;product=TonB-dependent receptor;protein_id=WP_012026404.1;transl_table=11;translation=length.1023
NC_009441	GenBank	exon	11682	14753	.	-	1	Parent=FJOH_RS22925
NC_009441	GenBank	gene	15228	16928	.	-	1	ID=FJOH_RS22930;Dbxref=GeneID:31767360;Name=FJOH_RS22930;old_locus_tag=Fjoh_4435
NC_009441	GenBank	mRNA	15228	16928	.	-	1	ID=FJOH_RS22930;Parent=FJOH_RS22930
NC_009441	GenBank	CDS	15228	16928	.	-	1	ID=FJOH_RS22930;Parent=FJOH_RS22930;Dbxref=GeneID:31767360;Name=FJOH_RS22930;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;old_locus_tag=Fjoh_4435;product=tetratricopeptide repeat protein;protein_id=WP_012026405.1;transl_table=11;translation=length.566
NC_009441	GenBank	exon	15228	16928	.	-	1	Parent=FJOH_RS22930
NC_009441	GenBank	gene	17768	21286	.	-	1	ID=FJOH_RS26380;Dbxref=GeneID:31768036;Name=FJOH_RS26380;old_locus_tag=Fjoh_4436
NC_009441	GenBank	mRNA	17768	21286	.	-	1	ID=FJOH_RS26380;Parent=FJOH_RS26380
NC_009441	GenBank	CDS	17768	21286	.	-	1	ID=FJOH_RS26380;Parent=FJOH_RS26380;Dbxref=GeneID:31768036;Name=FJOH_RS26380;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF027726.1%2CHMM:TIGR04183.1,COORDINATES: similar to AA sequence:RefSeq:WP_020403811.1;old_locus_tag=Fjoh_4436;product=SusF/SusE family outer membrane protein;protein_id=WP_012026406.1;transl_table=11;translation=length.1172
NC_009441	GenBank	exon	17768	21286	.	-	1	Parent=FJOH_RS26380