##gff-version 3
##sequence-region NC_009441 1 15569
# conversion-by bp_genbank2gff3.pl
# organism Flavobacterium johnsoniae UW101
# Note Flavobacterium johnsoniae UW101, complete sequence.
# date 04-APR-2020
NC_009441	GenBank	region	1	15569	.	+	1	ID=NC_009441;Dbxref=BioProject:PRJNA224116,ATCC:17061,taxon:376686;Name=NC_009441;Note=Flavobacterium johnsoniae UW101%2C complete sequence.,REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set,GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,repeat_region Genes (total) :: 5,234 CDSs (total) :: 5,151 Genes (coding) :: 5,091 CDSs (with protein) :: 5,091 Genes (RNA) :: 83 rRNAs :: 6,6,6 (5S,16S,23S) complete rRNAs :: 6,6,6 (5S,16S,23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;comment1=REFSEQ INFORMATION: The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98%25 coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID%3D10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/04/2020 11:53:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set%3B GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B repeat_region Genes (total) :: 5%2C234 CDSs (total) :: 5%2C151 Genes (coding) :: 5%2C091 CDSs (with protein) :: 5%2C091 Genes (RNA) :: 83 rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) complete rRNAs :: 6%2C 6%2C 6 (5S%2C 16S%2C 23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 22 of 60 Pseudo Genes (incomplete) :: 34 of 60 Pseudo Genes (internal stop) :: 8 of 60 Pseudo Genes (multiple problems) :: 4 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. ;date=04-APR-2020;mol_type=genomic DNA;organism=Flavobacterium johnsoniae UW101;strain=UW101%3B ATCC 17061;type_material=type strain of Flavobacterium johnsoniae
NC_009441	GenBank	gene	1	1011	.	+	1	ID=FJOH_RS14050;Dbxref=GeneID:31765618;Name=FJOH_RS14050;old_locus_tag=Fjoh_2710
NC_009441	GenBank	mRNA	1	1011	.	+	1	ID=FJOH_RS14050;Parent=FJOH_RS14050
NC_009441	GenBank	CDS	1	1011	.	+	1	ID=FJOH_RS14050;Parent=FJOH_RS14050;Dbxref=GeneID:31765618;Name=FJOH_RS14050;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012024771.1;old_locus_tag=Fjoh_2710;product=LacI family transcriptional regulator;protein_id=WP_012024771.1;transl_table=11;translation=length.336
NC_009441	GenBank	exon	1	1011	.	+	1	Parent=FJOH_RS14050
NC_009441	GenBank	gene	1295	4387	.	+	1	ID=FJOH_RS14055;Dbxref=GeneID:31765619;Name=FJOH_RS14055;old_locus_tag=Fjoh_2711
NC_009441	GenBank	mRNA	1295	4387	.	+	1	ID=FJOH_RS14055;Parent=FJOH_RS14055
NC_009441	GenBank	CDS	1295	4387	.	+	1	ID=FJOH_RS14055;Parent=FJOH_RS14055;Dbxref=GeneID:31765619;Name=FJOH_RS14055;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008461988.1;old_locus_tag=Fjoh_2711;product=SusC/RagA family TonB-linked outer membrane protein;protein_id=WP_044048323.1;transl_table=11;translation=length.1030
NC_009441	GenBank	exon	1295	4387	.	+	1	Parent=FJOH_RS14055
NC_009441	GenBank	gene	4400	5914	.	+	1	ID=FJOH_RS14060;Dbxref=GeneID:31765620;Name=FJOH_RS14060;old_locus_tag=Fjoh_2712
NC_009441	GenBank	mRNA	4400	5914	.	+	1	ID=FJOH_RS14060;Parent=FJOH_RS14060
NC_009441	GenBank	CDS	4400	5914	.	+	1	ID=FJOH_RS14060;Parent=FJOH_RS14060;Dbxref=GeneID:31765620;Name=FJOH_RS14060;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008461989.1;old_locus_tag=Fjoh_2712;product=SusD/RagB family nutrient-binding outer membrane lipoprotein;protein_id=WP_012024773.1;transl_table=11;translation=length.504
NC_009441	GenBank	exon	4400	5914	.	+	1	Parent=FJOH_RS14060
NC_009441	GenBank	gene	6375	8336	.	+	1	ID=FJOH_RS14065;Dbxref=GeneID:31765621;Name=FJOH_RS14065;old_locus_tag=Fjoh_2713
NC_009441	GenBank	mRNA	6375	8336	.	+	1	ID=FJOH_RS14065;Parent=FJOH_RS14065
NC_009441	GenBank	CDS	6375	8336	.	+	1	ID=FJOH_RS14065;Parent=FJOH_RS14065;Dbxref=GeneID:31765621;Name=FJOH_RS14065;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008461990.1;old_locus_tag=Fjoh_2713;product=glycoside hydrolase;protein_id=WP_044047752.1;transl_table=11;translation=length.653
NC_009441	GenBank	exon	6375	8336	.	+	1	Parent=FJOH_RS14065
NC_009441	GenBank	gene	8483	10744	.	+	1	ID=FJOH_RS14070;Dbxref=GeneID:31765622;Name=FJOH_RS14070;old_locus_tag=Fjoh_2714
NC_009441	GenBank	mRNA	8483	10744	.	+	1	ID=FJOH_RS14070;Parent=FJOH_RS14070
NC_009441	GenBank	CDS	8483	10744	.	+	1	ID=FJOH_RS14070;Parent=FJOH_RS14070;Dbxref=GeneID:31765622;Name=FJOH_RS14070;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008461992.1;old_locus_tag=Fjoh_2714;product=glycoside hydrolase family 92 protein;protein_id=WP_012024775.1;transl_table=11;translation=length.753
NC_009441	GenBank	exon	8483	10744	.	+	1	Parent=FJOH_RS14070
NC_009441	GenBank	gene	10897	13176	.	+	1	ID=FJOH_RS14075;Dbxref=GeneID:31765623;Name=FJOH_RS14075;old_locus_tag=Fjoh_2715
NC_009441	GenBank	mRNA	10897	13176	.	+	1	ID=FJOH_RS14075;Parent=FJOH_RS14075
NC_009441	GenBank	CDS	10897	13176	.	+	1	ID=FJOH_RS14075;Parent=FJOH_RS14075;Dbxref=GeneID:31765623;Name=FJOH_RS14075;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008461995.1;old_locus_tag=Fjoh_2715;product=glycoside hydrolase family 92 protein;protein_id=WP_012024776.1;transl_table=11;translation=length.759
NC_009441	GenBank	exon	10897	13176	.	+	1	Parent=FJOH_RS14075
NC_009441	GenBank	gene	13185	14648	.	+	1	ID=FJOH_RS14080;Dbxref=GeneID:31765624;Name=FJOH_RS14080;old_locus_tag=Fjoh_2716
NC_009441	GenBank	mRNA	13185	14648	.	+	1	ID=FJOH_RS14080;Parent=FJOH_RS14080
NC_009441	GenBank	CDS	13185	14648	.	+	1	ID=FJOH_RS14080;Parent=FJOH_RS14080;Dbxref=GeneID:31765624;Name=FJOH_RS14080;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008461997.1;old_locus_tag=Fjoh_2716;product=glycoside hydrolase family 125 protein;protein_id=WP_012024777.1;transl_table=11;translation=length.487
NC_009441	GenBank	exon	13185	14648	.	+	1	Parent=FJOH_RS14080
NC_009441	GenBank	gene	14670	15569	.	+	1	ID=FJOH_RS14085;Dbxref=GeneID:31765625;Name=FJOH_RS14085;old_locus_tag=Fjoh_2717
NC_009441	GenBank	mRNA	14670	15569	.	+	1	ID=FJOH_RS14085;Parent=FJOH_RS14085
NC_009441	GenBank	CDS	14670	15569	.	+	1	ID=FJOH_RS14085;Parent=FJOH_RS14085;Dbxref=GeneID:31765625;Name=FJOH_RS14085;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008461998.1;old_locus_tag=Fjoh_2717;product=ROK family protein;protein_id=WP_012024778.1;transl_table=11;translation=length.299
NC_009441	GenBank	exon	14670	15569	.	+	1	Parent=FJOH_RS14085