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CAZyme Information: MGYG000004884_02202

You are here: Home > Sequence: MGYG000004884_02202

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; KLE1615;
CAZyme ID MGYG000004884_02202
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
258 MGYG000004884_390|CGC1 28381.33 5.9623
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004884 2896455 MAG China Asia
Gene Location Start: 1412;  End: 2188  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004884_02202.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 2 209 6.3e-42 0.5353846153846153

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.20e-46 10 242 285 533
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 5.18e-14 5 138 131 252
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 9.80e-14 1 138 216 342
Probable polygalacturonase
PLN02218 PLN02218 3.15e-12 3 140 233 359
polygalacturonase ADPG
PLN03010 PLN03010 1.39e-11 1 135 196 320
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCJ96409.1 1.42e-117 1 257 260 516
ACR72585.1 7.23e-110 1 258 261 518
BCJ93649.1 1.53e-103 1 258 261 518
CBL11994.1 3.92e-101 1 257 262 518
VCV21973.1 3.92e-101 1 257 262 518

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 5.90e-15 11 119 237 345
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
1BHE_A 4.50e-10 3 135 192 314
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
5OLP_A 9.25e-10 7 89 243 325
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 6.90e-40 3 186 63 247
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 1.90e-14 1 142 238 378
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
Q7M1E7 3.48e-11 1 135 222 346
Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1
Q8RY29 1.40e-10 3 138 233 357
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2
O22818 4.39e-10 1 135 192 317
Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000073 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004884_02202.