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CAZyme Information: MGYG000004810_00009
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | UMGS1815 sp900555345 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; CAG-272; UMGS1815; UMGS1815 sp900555345 | |||||||||||
| CAZyme ID | MGYG000004810_00009 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | Elongation factor 4 | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 5099; End: 7867 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG0532 | InfB | 0.0 | 423 | 922 | 1 | 505 | Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]. |
| TIGR00487 | IF-2 | 0.0 | 340 | 922 | 1 | 584 | translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors] |
| CHL00189 | infB | 0.0 | 300 | 922 | 118 | 740 | translation initiation factor 2; Provisional |
| PRK05306 | infB | 0.0 | 217 | 922 | 48 | 745 | translation initiation factor IF-2; Validated |
| cd01887 | IF2_eIF5B | 6.22e-102 | 428 | 590 | 1 | 168 | Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AGL64345.2 | 9.51e-199 | 365 | 920 | 297 | 855 |
| CAE6204650.1 | 5.18e-12 | 432 | 633 | 752 | 970 |
| AGL63702.2 | 1.35e-07 | 431 | 560 | 17 | 171 |
| AIA01457.1 | 9.88e-07 | 425 | 610 | 9 | 201 |
| AKA01905.1 | 1.74e-06 | 425 | 610 | 9 | 201 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JCJ_f | 5.29e-202 | 345 | 922 | 310 | 887 | Structuresof ribosome-bound initiation factor 2 reveal the mechanism of subunit association [Escherichia coli],3JCN_b Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I [Escherichia coli],5ME0_W Chain W, Translation initiation factor IF-2 [Escherichia coli K-12],5ME1_W Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 [Escherichia coli K-12] |
| 6O7K_f | 3.19e-191 | 426 | 922 | 9 | 506 | 30Sinitiation complex [Escherichia coli],6O9K_z 70S initiation complex [Escherichia coli] |
| 1ZO1_I | 9.61e-191 | 426 | 922 | 3 | 500 | IF2,IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex [Escherichia coli] |
| 3J4J_A | 5.56e-161 | 408 | 920 | 56 | 569 | Modelof full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map [Thermus thermophilus HB8] |
| 5LMV_a | 5.94e-161 | 408 | 920 | 56 | 569 | Structureof bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III) [Thermus thermophilus HB8] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q8RA37 | 2.29e-251 | 338 | 922 | 121 | 707 | Translation initiation factor IF-2 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=infB PE=3 SV=1 |
| B0K1D6 | 5.69e-248 | 345 | 922 | 114 | 692 | Translation initiation factor IF-2 OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=infB PE=3 SV=1 |
| B0K9Q0 | 1.77e-246 | 345 | 922 | 113 | 691 | Translation initiation factor IF-2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=infB PE=3 SV=1 |
| A0Q0Q7 | 6.14e-245 | 345 | 920 | 106 | 678 | Translation initiation factor IF-2 OS=Clostridium novyi (strain NT) OX=386415 GN=infB PE=3 SV=1 |
| B2V4G9 | 7.06e-245 | 345 | 922 | 107 | 684 | Translation initiation factor IF-2 OS=Clostridium botulinum (strain Alaska E43 / Type E3) OX=508767 GN=infB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000071 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |