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CAZyme Information: MGYG000004770_01557

You are here: Home > Sequence: MGYG000004770_01557

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Streptococcus sobrinus
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus sobrinus
CAZyme ID MGYG000004770_01557
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
213 22298.1 3.7697
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004770 2052412 MAG China Asia
Gene Location Start: 14711;  End: 15352  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004770_01557.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3942 COG3942 2.27e-24 85 183 47 149
Surface antigen [Cell wall/membrane/envelope biogenesis].
pfam05257 CHAP 3.98e-18 103 181 2 83
CHAP domain. This domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of Escherichia coli gss, where it functions as a glutathionylspermidine amidase EC:3.5.1.78. This domain is found to be the catalytic domain of PlyCA. CHAP is the amidase domain of bifunctional Escherichia coli glutathionylspermidine synthetase/amidase, and it catalyzes the hydrolysis of Gsp (glutathionylspermidine) into glutathione and spermidine.
PRK08581 PRK08581 6.64e-16 102 212 504 619
amidase domain-containing protein.
cd00118 LysM 2.46e-06 29 72 2 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam01476 LysM 4.80e-05 30 70 1 40
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AWN62848.1 7.17e-146 1 213 1 213
SQG18783.1 7.17e-146 1 213 1 213
AWN18203.1 7.17e-146 1 213 1 213
AWN20123.1 7.17e-146 1 213 1 213
SQG12836.1 7.17e-146 1 213 1 213

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4CGK_A 1.62e-33 103 210 284 390
Crystalstructure of the essential protein PcsB from Streptococcus pneumoniae [Streptococcus pneumoniae D39],4CGK_B Crystal structure of the essential protein PcsB from Streptococcus pneumoniae [Streptococcus pneumoniae D39]
2K3A_A 2.51e-19 88 186 29 133
ChainA, CHAP domain protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292]
2LRJ_A 2.45e-13 97 186 2 92
ChainA, Staphyloxanthin biosynthesis protein, putative [Staphylococcus aureus subsp. aureus COL]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8DVU8 1.26e-72 5 212 6 211
Putative hydrolase SMU_367 OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) OX=210007 GN=SMU_367 PE=3 SV=1
Q2G0D4 1.45e-23 23 192 84 251
Probable autolysin SsaALP OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=SAOUHSC_00671 PE=1 SV=1
Q49UX4 1.69e-16 29 210 151 325
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=sle1 PE=3 SV=1
Q5HCY4 2.62e-15 50 182 98 231
Staphylococcal secretory antigen ssaA1 OS=Staphylococcus aureus (strain COL) OX=93062 GN=ssaA1 PE=3 SV=1
Q53587 2.62e-15 50 182 98 231
Staphylococcal secretory antigen SsaA OS=Staphylococcus aureus (strain Newman) OX=426430 GN=ssaA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000245 0.998937 0.000240 0.000187 0.000186 0.000158

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004770_01557.