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CAZyme Information: MGYG000004708_00424

You are here: Home > Sequence: MGYG000004708_00424

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella;
CAZyme ID MGYG000004708_00424
CAZy Family PL17
CAZyme Description Exo-oligoalginate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
740 MGYG000004708_20|CGC1 83749.46 7.2965
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004708 1820911 MAG China Asia
Gene Location Start: 10944;  End: 13166  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.- 4.2.2.3

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL17 412 547 1.1e-44 0.9568345323741008
PL17 212 290 8e-24 0.6165413533834586

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07940 Hepar_II_III 1.07e-14 401 571 3 159
Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.
pfam05426 Alginate_lyase 4.52e-14 98 324 40 268
Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.
PRK00325 algL 0.005 187 299 165 268
polysaccharide lyase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QNL39960.1 2.48e-316 27 739 4 717
QUT26278.1 6.57e-314 27 735 4 712
EGN08295.1 6.57e-314 27 735 4 712
QIU93441.1 4.35e-312 27 723 4 701
QNT66845.1 1.89e-300 29 739 5 715

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7BJT_A 1.45e-176 25 714 9 704
ChainA, Alginate lyase, family PL17 [Zobellia galactanivorans],7BJT_B Chain B, Alginate lyase, family PL17 [Zobellia galactanivorans]
7BM6_A 3.24e-175 25 714 9 704
ChainA, Alginate lyase, family PL17 [Zobellia galactanivorans],7BM6_B Chain B, Alginate lyase, family PL17 [Zobellia galactanivorans]
4NEI_A 1.14e-171 27 739 11 716
Alg17cPL17 Family Alginate Lyase [Saccharophagus degradans 2-40],4NEI_B Alg17c PL17 Family Alginate Lyase [Saccharophagus degradans 2-40]
4OJZ_A 2.54e-170 27 739 11 716
CrystalStructure of Alg17c Mutant Y258A Complexed with Alginate Trisaccharide [Saccharophagus degradans 2-40],4OJZ_B Crystal Structure of Alg17c Mutant Y258A Complexed with Alginate Trisaccharide [Saccharophagus degradans 2-40],4OK2_A Crystal Structure of Alg17c Mutant Y258A [Saccharophagus degradans 2-40],4OK2_B Crystal Structure of Alg17c Mutant Y258A [Saccharophagus degradans 2-40]
4OK4_A 5.07e-170 27 739 11 716
CrystalStructure of Alg17c Mutant H202L [Saccharophagus degradans 2-40],4OK4_B Crystal Structure of Alg17c Mutant H202L [Saccharophagus degradans 2-40]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q21FJ0 6.25e-171 27 739 11 716
Exo-oligoalginate lyase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=alg17C PE=1 SV=1
B2FSW8 2.02e-161 15 716 7 694
Alginate lyase OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=Smlt2602 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.008698 0.990004 0.000545 0.000323 0.000211 0.000190

TMHMM  Annotations      download full data without filtering help

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