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CAZyme Information: MGYG000004588_02645

You are here: Home > Sequence: MGYG000004588_02645

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella sp900317685
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp900317685
CAZyme ID MGYG000004588_02645
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
506 54885.98 8.4378
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004588 3452051 MAG France Europe
Gene Location Start: 7276;  End: 8796  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004588_02645.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 85 418 1.4e-59 0.9107692307692308

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 3.76e-37 46 338 73 401
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 7.09e-27 134 420 33 310
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 7.73e-27 48 346 15 302
Probable polygalacturonase At3g15720
PLN02218 PLN02218 2.87e-25 57 348 68 359
polygalacturonase ADPG
PLN02793 PLN02793 1.66e-20 158 355 152 350
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QNT65232.1 2.39e-138 1 467 1 486
QEC72689.1 7.07e-81 43 455 50 441
BAV07348.1 6.91e-70 30 455 20 434
AHF18012.1 2.05e-66 40 447 26 435
QEC57624.1 6.92e-63 45 416 32 396

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1BHE_A 8.30e-29 65 347 16 316
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
6KVE_A 3.61e-12 145 365 76 295
ChainA, Endo-polygalacturonase [Evansstolkia leycettana]
6KVH_A 3.61e-12 145 365 76 295
ChainA, endo-polygalacturonase [Evansstolkia leycettana]
7E56_A 6.10e-12 145 349 68 269
ChainA, Endo-polygalacturonase [Evansstolkia leycettana]
2UVE_A 1.88e-11 57 341 157 496
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9LW07 4.55e-29 48 346 15 302
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1
P18192 7.64e-29 68 347 48 342
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P26509 6.71e-28 65 347 42 342
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1
Q94AJ5 3.36e-18 145 456 143 443
Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g80170 PE=1 SV=1
A7PZL3 2.42e-17 49 335 55 361
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000246 0.999034 0.000182 0.000184 0.000162 0.000141

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004588_02645.