CAZyme Information: MGYG000004479_03022

Basic Information

• Species: Phocaeicola mediterraneensis
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola mediterraneensis
• CAZyme ID: MGYG000004479_03022
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
989	MGYG000004479_58|CGC1	109720.78	7.3078

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004479	3712458	MAG	Israel	Asia

• Gene Location: Start: 4239; End: 7208 Strand: +

Full Sequence      

MIKRCWWSWVLCSLMINGILAQEPALLKQMQDTEACRKWVDEQMGRMTLKQKVGQLFVYT
LQPVTNQYTKNVLRKAVEDYAIGGLLFTGGEAGKQVQLTNFAQSYASVPLMITFDGEWGL
GMRLKNTPSFPYNRVLGCVQNDSLIYAYGKEVARQCRLIGVQVNFAPVADVDNNPNNPVI
NFRSFGSEAKRVADKVVAYATGLEAGGVLAVCKHFPGHGDTEIDSHKALPKLNFDRLRLD
SVELYPFKKAIEAGVGGVMVGHLQAPTLGEKPASISQGVIMRTLIDELRFQGLVVTDALE
MKGIAGHEDVCAKALIAGNDVLLAPRNLKKEIDGVMTAIKKGRLSEEEIDRKCRKVLMFK
YALGLSSWQEIPVEGLEAKINTLESLALQQNLSKAAVTVLKDSLGLLPLDLSVSGTVLLS
VSSSLSEAYPFYHQLREEFPVSWLHANVDSLEAIGTRLRPAQRVLVALHTAEIEPYAPLL
ENLAADKPLALVCFGDMKMLEKVPEVVRHSSTVILAHTDADDVQRQVADLFLGNAYADGR
LSIPLAGLFKAGDGITVDPDAPRKYAPEEVGMDASILARIDSIAEEGIRLGAYPGCHVMI
LREGLPVYNKCFGNYTYGGMTPVKENSLYDLASLTKVTATLLAVMKLYDEGKFGLTDRVS
DYLPVLKKTDKSRLTIQDLLFHESGLPAYLPFYEEAIDMKSCKGELFRKKPDKNHTLKLA
ENVYACKDFRYKPEWVSRIPSADYPLQVADSLFLNKEFCREVVKQIVEAPLKGKSYRYSC
LNFMLLKEMVEKITGTPMDVYLDSVFYSPMGLRHTAFQPLHKFKKEQMVPSVGKDLLRGG
PLQGFVQDEAAAFMGGVSGNAGLFSTAHDVGRIAQMWLDKGICGDRRYLSRATCELFTTL
KSRSSRRGLGFDKPDMEHPENSPCTPEAPASVFGHTGYTGTCVWVDPDNDLVFVFLSNRT
YPSALEPNNLVKYNIRTRMQQAMYQSIMH

Enzyme Prediction     

No EC number prediction in MGYG000004479_03022.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	103	323	9.3e-53	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00933	Glyco_hydro_3	5.72e-69	48	357	1	314	Glycosyl hydrolase family 3 N terminal domain.
COG1472	BglX	2.75e-66	47	414	1	355	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
PRK03642	PRK03642	6.61e-63	564	967	27	403	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	6.65e-45	580	962	1	311	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	4.26e-43	566	962	27	366	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QRO23705.1	0.0	1	987	1	986
ADY37542.1	0.0	10	987	6	985
ALA72189.1	0.0	22	988	23	991
AII66347.1	0.0	22	988	23	991
QJR54154.1	0.0	22	988	23	991

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6K5J_A	6.10e-57	47	545	11	531	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3SQL_A	7.20e-54	54	372	31	358	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]
3BMX_A	8.75e-53	14	408	7	446	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	3.54e-52	44	408	13	420	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	5.83e-52	44	408	43	450	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	4.79e-52	14	408	7	446	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P77619	3.10e-44	566	967	29	403	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	4.75e-43	566	967	29	403	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
Q8Z4S7	3.79e-42	566	967	29	403	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella typhi OX=90370 GN=yfeW PE=3 SV=1
Q5PCQ2	5.13e-42	566	967	29	403	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) OX=295319 GN=yfeW PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000366	0.998998	0.000193	0.000142	0.000137	0.000140

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004479_03022.