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CAZyme Information: MGYG000004385_00856

You are here: Home > Sequence: MGYG000004385_00856

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lachnospira sp900545725
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira; Lachnospira sp900545725
CAZyme ID MGYG000004385_00856
CAZy Family PL9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1766 190274.93 4.398
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004385 2735315 MAG Israel Asia
Gene Location Start: 32980;  End: 38280  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004385_00856.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 937 1343 3.8e-103 0.984

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07554 FIVAR 0.004 1412 1478 1 68
FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.
pfam07523 Big_3 0.008 427 502 1 67
Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADD02972.1 2.10e-203 4 1350 2 1276
ADQ05619.1 1.63e-198 53 1336 58 1279
BAC87940.1 6.14e-190 4 1315 2 1237
AGI38277.1 1.19e-189 4 1315 2 1237
AGC67199.1 1.19e-189 4 1315 2 1237

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 9.12e-30 940 1329 18 361
ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A 1.74e-13 940 1309 6 392
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P22751 7.93e-50 604 1209 34 626
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P0C1A7 7.59e-29 940 1329 43 386
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1
P0C1A6 1.85e-28 940 1227 43 328
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000434 0.998809 0.000191 0.000214 0.000161 0.000151

TMHMM  Annotations      download full data without filtering help

start end
7 24
1740 1759