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CAZyme Information: MGYG000004384_01297

You are here: Home > Sequence: MGYG000004384_01297

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus;
CAZyme ID MGYG000004384_01297
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
953 105187.3 4.6224
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004384 2222403 MAG Israel Asia
Gene Location Start: 5940;  End: 8801  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004384_01297.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 212 433 4.2e-35 0.9207920792079208
CBM13 557 702 1.6e-23 0.7021276595744681
CBM13 711 870 1.8e-17 0.776595744680851

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 9.56e-30 167 513 30 343
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 4.86e-20 236 433 17 188
Amb_all domain.
pfam14200 RicinB_lectin_2 1.96e-16 642 741 1 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 5.61e-16 558 636 15 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 2.11e-15 596 685 5 89
Ricin-type beta-trefoil lectin domain-like.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL17651.1 7.75e-177 33 948 34 893
CDM70399.1 1.07e-164 4 700 8 696
AUO18238.1 2.93e-145 18 700 19 707
CBL16867.1 2.65e-141 8 947 10 912
ASR46637.1 2.19e-82 33 530 35 536

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3KRG_A 7.49e-12 236 456 128 350
ChainA, Pectate lyase [Bacillus subtilis]
5AMV_A 7.49e-12 236 456 128 350
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
1BN8_A 8.32e-12 236 456 149 371
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
2BSP_A 1.94e-11 236 456 149 371
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
2NZM_A 4.11e-11 236 456 128 350
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 1.63e-22 169 511 34 336
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 1.77e-21 169 511 34 336
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P24112 6.21e-18 167 492 7 291
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
P27027 7.02e-16 186 511 18 303
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
Q5AVN4 7.62e-12 199 403 63 243
Pectate lyase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.003479 0.994825 0.001065 0.000233 0.000195 0.000181

TMHMM  Annotations      download full data without filtering help

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