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CAZyme Information: MGYG000004314_00213

You are here: Home > Sequence: MGYG000004314_00213

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Varibaculum timonense
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Varibaculum; Varibaculum timonense
CAZyme ID MGYG000004314_00213
CAZy Family GH84
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1221 133080.43 6.1328
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004314 2027678 MAG Israel Asia
Gene Location Start: 14967;  End: 18632  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.35 3.2.1.52

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH84 212 520 7.8e-87 0.9898305084745763
CBM32 825 947 2.6e-16 0.8951612903225806

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07555 NAGidase 2.46e-91 212 518 1 291
beta-N-acetylglucosaminidase. This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.
pfam02838 Glyco_hydro_20b 7.69e-15 50 205 2 123
Glycosyl hydrolase family 20, domain 2. This domain has a zincin-like fold.
pfam00754 F5_F8_type_C 2.40e-07 820 947 1 127
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
NF033201 Vip_LPXTG_Lm 5.12e-06 853 1216 71 385
cell invasion LPXTG protein Vip. Vip (Virulence protein), like the LPXTG-type internalins, is an LPXTG-anchored surface protein of the mammalian cell-invading pathogen Listeria monocytogenes, but absent from the related species Listeria innocua. For certain cell types, Vip is required for Listeria's ability to invade. It appears to bind the endoplasmic reticulum (ER) resident chaperone Gp96 as its receptor.
PHA03369 PHA03369 4.96e-05 914 1164 417 656
capsid maturational protease; Provisional

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QWT17802.1 2.52e-299 17 967 8 969
BCL58377.1 1.90e-219 50 951 35 931
QMW73896.1 1.44e-218 46 948 49 947
QQY28346.1 1.44e-218 46 948 49 947
QPS12837.1 1.44e-218 46 948 49 947

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6PV4_A 8.66e-143 50 680 32 653
Structureof CpGH84A [Clostridium perfringens ATCC 13124],6PV4_B Structure of CpGH84A [Clostridium perfringens ATCC 13124],6PV4_C Structure of CpGH84A [Clostridium perfringens ATCC 13124],6PV4_D Structure of CpGH84A [Clostridium perfringens ATCC 13124]
6PWI_A 2.65e-87 47 669 31 622
Structureof CpGH84D [Clostridium perfringens ATCC 13124],6PWI_B Structure of CpGH84D [Clostridium perfringens ATCC 13124]
6PV5_A 2.23e-47 52 600 42 561
Structureof CpGH84B [Clostridium perfringens ATCC 13124]
2XPK_A 1.61e-40 36 623 3 551
Cell-penetrant,nanomolar O-GlcNAcase inhibitors selective against lysosomal hexosaminidases [Clostridium perfringens],2XPK_B Cell-penetrant, nanomolar O-GlcNAcase inhibitors selective against lysosomal hexosaminidases [Clostridium perfringens]
7K41_A 3.44e-40 47 600 1 505
ChainA, O-GlcNAcase BT_4395 [Escherichia coli K-12]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P26831 1.74e-180 50 948 39 942
Hyaluronoglucosaminidase OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=nagH PE=1 SV=2
Q89ZI2 5.14e-39 52 600 26 523
O-GlcNAcase BT_4395 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=BT_4395 PE=1 SV=1
Q0TR53 5.12e-38 36 623 33 581
O-GlcNAcase NagJ OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) OX=195103 GN=nagJ PE=1 SV=1
Q8XL08 1.07e-36 36 623 33 581
O-GlcNAcase NagJ OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=nagJ PE=1 SV=1
Q9EQQ9 7.92e-20 170 475 17 325
Protein O-GlcNAcase OS=Mus musculus OX=10090 GN=Oga PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000814 0.998275 0.000321 0.000199 0.000174 0.000162

TMHMM  Annotations      download full data without filtering help

start end
12 34
1194 1216