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CAZyme Information: MGYG000004165_01269
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ER4 sp003522105 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Oscillospiraceae; ER4; ER4 sp003522105 | |||||||||||
| CAZyme ID | MGYG000004165_01269 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 12566; End: 19954 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG4646 | COG4646 | 5.66e-77 | 1170 | 1694 | 1 | 540 | Adenine-specific DNA methylase, N12 class [Replication, recombination and repair]. |
| COG4646 | COG4646 | 2.61e-26 | 1835 | 2026 | 439 | 637 | Adenine-specific DNA methylase, N12 class [Replication, recombination and repair]. |
| COG0553 | HepA | 9.18e-13 | 1525 | 2203 | 220 | 848 | Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]. |
| smart00487 | DEXDc | 1.25e-10 | 1638 | 1741 | 7 | 110 | DEAD-like helicases superfamily. |
| cd18011 | DEXDc_RapA | 2.33e-10 | 1640 | 1925 | 1 | 202 | DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ASV45029.1 | 0.0 | 872 | 2383 | 1542 | 3142 |
| QIW86704.1 | 0.0 | 872 | 2383 | 1610 | 3210 |
| QIW86628.1 | 0.0 | 872 | 2383 | 1610 | 3210 |
| AEY69616.1 | 8.52e-305 | 878 | 2383 | 1689 | 3286 |
| AXF51455.1 | 3.85e-303 | 878 | 2413 | 1782 | 3398 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q71TF8 | 1.92e-41 | 887 | 2235 | 39 | 1591 | Defense against restriction protein B OS=Escherichia phage P1 OX=2886926 GN=darB PE=3 SV=1 |
| P52284 | 8.91e-06 | 965 | 1058 | 26 | 115 | Type II methyltransferase M.CvrRI OS=Paramecium bursaria Chlorella virus XZ-6E OX=36360 GN=CVIRIM PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000033 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |