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CAZyme Information: MGYG000004151_04436
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudomonas citronellolis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas citronellolis | |||||||||||
| CAZyme ID | MGYG000004151_04436 | |||||||||||
| CAZy Family | AA3 | |||||||||||
| CAZyme Description | Oxygen-dependent choline dehydrogenase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 2299; End: 3963 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 4 | 528 | 5.1e-157 | 0.9929577464788732 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK02106 | PRK02106 | 0.0 | 1 | 540 | 2 | 544 | choline dehydrogenase; Validated |
| COG2303 | BetA | 1.01e-176 | 1 | 533 | 4 | 539 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| TIGR03970 | Rv0697 | 9.48e-101 | 6 | 528 | 2 | 487 | dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. |
| pfam00732 | GMC_oxred_N | 4.20e-53 | 73 | 295 | 15 | 218 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
| pfam05199 | GMC_oxred_C | 3.15e-47 | 385 | 523 | 1 | 143 | GMC oxidoreductase. This domain found associated with pfam00732. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CAB3230510.1 | 7.92e-156 | 4 | 533 | 24 | 561 |
| ANI26486.1 | 1.93e-154 | 4 | 541 | 70 | 615 |
| CEF60566.1 | 1.40e-150 | 7 | 534 | 35 | 575 |
| AWP09430.1 | 1.01e-149 | 3 | 541 | 18 | 564 |
| CAG5086058.1 | 1.42e-129 | 4 | 533 | 14 | 569 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3LJP_A | 8.61e-86 | 4 | 527 | 13 | 526 | ChainA, Choline oxidase [Arthrobacter globiformis],3LJP_B Chain B, Choline oxidase [Arthrobacter globiformis] |
| 2JBV_A | 3.34e-85 | 4 | 527 | 13 | 526 | Crystalstructure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],2JBV_B Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],4MJW_A Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis],4MJW_B Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis] |
| 3NNE_A | 3.34e-85 | 4 | 527 | 13 | 526 | Crystalstructure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_B Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_C Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_D Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_E Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_F Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_G Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_H Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis] |
| 3T37_A | 4.50e-78 | 6 | 521 | 19 | 514 | Crystalstructure of pyridoxine 4-oxidase from Mesorbium loti [Mesorhizobium loti] |
| 4HA6_A | 8.37e-77 | 6 | 521 | 3 | 498 | Crystalstructure of pyridoxine 4-oxidase - pyridoxamine complex [Mesorhizobium loti] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q985M5 | 7.66e-161 | 4 | 535 | 3 | 534 | Oxygen-dependent choline dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=betA PE=3 SV=1 |
| C3MIE4 | 1.69e-159 | 4 | 533 | 2 | 531 | Oxygen-dependent choline dehydrogenase OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=betA PE=3 SV=1 |
| Q8BJ64 | 1.55e-158 | 2 | 541 | 40 | 587 | Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1 |
| Q8G1Z8 | 4.38e-157 | 4 | 533 | 2 | 531 | Oxygen-dependent choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=betA PE=3 SV=1 |
| Q8NE62 | 4.67e-157 | 2 | 541 | 38 | 585 | Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000066 | 0.000002 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |