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CAZyme Information: MGYG000004088_00212
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Firm-11 sp900548145 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; CAG-74; Firm-11; Firm-11 sp900548145 | |||||||||||
| CAZyme ID | MGYG000004088_00212 | |||||||||||
| CAZy Family | CBM16 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 237739; End: 241914 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT39 | 940 | 1180 | 5e-54 | 0.905829596412556 |
| CBM16 | 25 | 149 | 4.2e-16 | 0.9224137931034483 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam16192 | PMT_4TMC | 8.98e-22 | 1190 | 1373 | 1 | 198 | C-terminal four TMM region of protein-O-mannosyltransferase. PMT_4TMC is the C-terminal four membrane-pass region of protein-O-mannosyltransferases and similar enzymes. |
| COG1928 | PMT1 | 3.59e-16 | 942 | 1118 | 50 | 229 | Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]. |
| COG5542 | COG5542 | 1.80e-13 | 296 | 678 | 91 | 404 | Mannosyltransferase related to Gpi18 [Carbohydrate transport and metabolism]. |
| pfam02366 | PMT | 1.25e-12 | 940 | 1120 | 21 | 204 | Dolichyl-phosphate-mannose-protein mannosyltransferase. This is a family of Dolichyl-phosphate-mannose-protein mannosyltransferase proteins EC:2.4.1.109. These proteins are responsible for O-linked glycosylation of proteins, they catalyze the reaction:- Dolichyl phosphate D-mannose + protein <=> dolichyl phosphate + O-D-mannosyl-protein. Also in this family is Drosophila rotated abdomen protein which is a putative mannosyltransferase. This family appears to be distantly related to pfam02516 (A Bateman pers. obs.). This family also contains sequences from ArnTs (4-amino-4-deoxy-L-arabinose lipid A transferase). They catalyze the addition of 4-amino-4-deoxy-l-arabinose (l-Ara4N) to the lipid A moiety of the lipopolysaccharide. This is a critical modification enabling bacteria (e.g. Escherichia coli and Salmonella typhimurium) to resist killing by antimicrobial peptides such as polymyxins. Members such as undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase are predicted to have 12 trans-membrane regions. The N-terminal portion of these proteins is hypothesized to have a conserved glycosylation activity which is shared between distantly related oligosaccharyltransferases ArnT and PglB families. |
| pfam02018 | CBM_4_9 | 8.55e-09 | 25 | 139 | 2 | 112 | Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QUC68008.1 | 2.11e-302 | 5 | 1388 | 9 | 1423 |
| QTE71236.1 | 8.83e-297 | 14 | 1388 | 4 | 1408 |
| QTE75201.1 | 1.38e-296 | 14 | 1388 | 19 | 1423 |
| QTE68569.1 | 6.84e-288 | 23 | 1373 | 36 | 1392 |
| QUA53848.1 | 8.73e-279 | 22 | 1373 | 31 | 1362 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| L8F4Z2 | 4.74e-24 | 942 | 1371 | 67 | 506 | Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Mycolicibacterium smegmatis (strain MKD8) OX=1214915 GN=pmt PE=3 SV=1 |
| P9WN04 | 1.57e-23 | 942 | 1380 | 73 | 520 | Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=pmt PE=3 SV=2 |
| P9WN05 | 1.57e-23 | 942 | 1380 | 73 | 520 | Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=pmt PE=1 SV=2 |
| Q8NRZ6 | 3.00e-17 | 965 | 1377 | 99 | 515 | Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=pmt PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000252 | 0.998982 | 0.000250 | 0.000171 | 0.000159 | 0.000154 |
TMHMM Annotations download full data without filtering help
| start | end |
|---|---|
| 5 | 22 |
| 214 | 236 |
| 243 | 262 |
| 277 | 296 |
| 303 | 325 |
| 335 | 352 |
| 359 | 381 |
| 410 | 432 |
| 445 | 467 |
| 515 | 537 |
| 557 | 579 |
| 603 | 620 |
| 646 | 668 |
| 683 | 705 |
| 756 | 778 |
| 984 | 1006 |
| 1035 | 1057 |
| 1095 | 1117 |
| 1154 | 1176 |
| 1251 | 1268 |
| 1288 | 1307 |
| 1312 | 1334 |
| 1341 | 1363 |