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CAZyme Information: MGYG000004067_00587
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; CAG-274; ; | |||||||||||
| CAZyme ID | MGYG000004067_00587 | |||||||||||
| CAZy Family | CBM13 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 7905; End: 10823 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL9 | 546 | 934 | 9e-61 | 0.864 |
| CBM13 | 43 | 191 | 2.4e-20 | 0.723404255319149 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam14200 | RicinB_lectin_2 | 4.38e-17 | 79 | 170 | 3 | 89 | Ricin-type beta-trefoil lectin domain-like. |
| pfam14200 | RicinB_lectin_2 | 2.00e-14 | 37 | 121 | 8 | 89 | Ricin-type beta-trefoil lectin domain-like. |
| pfam14200 | RicinB_lectin_2 | 7.14e-09 | 129 | 186 | 3 | 58 | Ricin-type beta-trefoil lectin domain-like. |
| pfam00652 | Ricin_B_lectin | 1.22e-06 | 44 | 180 | 3 | 126 | Ricin-type beta-trefoil lectin domain. |
| cd00161 | RICIN | 5.08e-06 | 44 | 182 | 1 | 124 | Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CBZ48778.1 | 9.48e-186 | 383 | 972 | 37 | 606 |
| BAK28435.1 | 9.48e-186 | 383 | 972 | 37 | 606 |
| QKI00169.1 | 9.48e-186 | 383 | 972 | 37 | 606 |
| QWX86240.1 | 9.48e-186 | 383 | 972 | 37 | 606 |
| CBI14069.1 | 7.50e-185 | 383 | 972 | 37 | 606 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1RU4_A | 1.36e-11 | 647 | 902 | 109 | 296 | ChainA, Pectate lyase [Dickeya chrysanthemi] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P0C1A6 | 2.05e-11 | 647 | 902 | 134 | 321 | Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1 |
| P0C1A7 | 8.41e-11 | 647 | 902 | 134 | 321 | Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000388 | 0.998758 | 0.000184 | 0.000272 | 0.000209 | 0.000183 |
