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CAZyme Information: MGYG000003994_00307

You are here: Home > Sequence: MGYG000003994_00307

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; UBA11471; UBA11471;
CAZyme ID MGYG000003994_00307
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
543 59389.29 6.7317
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003994 2451435 MAG United Kingdom Europe
Gene Location Start: 1907;  End: 3538  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003994_00307.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 68 405 1.6e-75 0.92

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 5.21e-65 38 401 79 483
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02188 PLN02188 1.56e-19 38 421 33 393
polygalacturonase/glycoside hydrolase family protein
pfam00295 Glyco_hydro_28 2.47e-16 71 420 1 319
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 1.06e-14 3 410 33 413
polygalacturonase ADPG
PLN03010 PLN03010 3.54e-13 43 343 48 316
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT46230.1 2.63e-110 32 492 12 467
QRQ48165.1 5.24e-110 32 492 12 467
ACU05310.1 3.25e-108 21 486 8 468
AXY78586.1 1.22e-106 43 495 29 476
ANE51485.1 1.91e-103 43 486 23 461

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 3.34e-32 37 333 40 356
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
3JUR_A 1.42e-27 47 399 33 407
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
4MXN_A 9.75e-25 43 267 23 236
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]
2UVE_A 4.29e-18 42 249 157 407
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
1BHE_A 6.69e-13 50 405 19 364
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 3.83e-21 47 439 68 447
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P15922 2.53e-20 42 299 152 455
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
Q02096 4.42e-15 36 431 77 452
Polygalacturonase OS=Persea americana OX=3435 PE=2 SV=1
P18192 3.21e-14 50 405 45 390
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P35338 1.05e-12 41 423 40 401
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.015132 0.983900 0.000396 0.000206 0.000169 0.000160

TMHMM  Annotations      download full data without filtering help

start end
24 41